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Information on SUBCLASS 3.4.2
Subclass Accession number: 8996
Subclass: 3.4.2 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 13.6 +/- 16.9
Average RMSD (Å) : 0.871 +/- 0.242

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpXXpXX
(φψ)-conformation: aapapaa
Pattern: xxxxx[aest]x[dest][dehpst]x[aegkst][aekqrs]x
Conservation:-0.879-0.9990.330-0.262-0.6461.034-0.6052.0970.607-0.533-0.3361.325-1.132
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aqf_E_171aqf   E1729LHAAMADTFLEHMHHHHT-SSHHHHHaaaaaxabaaaaa
1azw_A_1741azw   A179191HRRLTSDDEATRLHHHHT-S-HHHHHaaaaaxaxaaaaa
1cm8_A_2471cm8   A248260EFVQRLQSDEAKNHHHHT-S-HHHHHaaaaapaxaaaaa
1dbt_A_2151dbt   A215227RSITKAEDPVKAYHHHHTSS-HHHHHaaaaaxabaaaaa
1j7n_A_1681j7n   A175187NTIKNASDSDGQDHHHHTSSSSHHHHaaaaaxaxaaaaa
1j7n_A_7331j7n   A741753FRLMHSTDHAERLHHHHT-SSHHHHHaaaaaxaxaaaaa
1m0u_A_1281m0u   A149161AVVSYEPEDEIKEHHHHT-SSHHHHHaaaaapaxaaaaa
1oaa_*_2051oaa   -209221LARETSKDPELRSHHHHH-S-HHHHHaaaaapaxaaaaa
1poc_*_611poc   -6981DCLKNSADTISSYHHHHT-S-HHHHHaaaaaxaxaaaaa
1q6o_A_1921q6o   A192204RSIRDAASPVEAAHHHHTSS-HHHHHaaaaaxabaaaaa
1qht_A_4481qht   A465477RKMKATVDPLEKKHHHHT---HHHHHaaaaabaxaaaaa
1qsa_A_5721qsa   A574586AFVESIPFSETRGHHHHH-S-HHHHHaaaaapaxaaaaa
1qtr_A_1771qtr   A182194RQRLTSADPQVQLHHHHT-S-HHHHHaaaaaxaxaaaaa
1r2f_A_1291r2f   A139151LAHYVSDEPLKKKHHHHHSS-HHHHHaaaaaxabaaaaa
1r2f_A_741r2f   A7789SLMADAITPHEEAHHHTT-SSHHHHHaaaaaxabaaaaa
1tgo_A_4481tgo   A465477KKMKATIDPIEKKHHHHH---HHHHHaaaaaxaxaaaaa
2tps_A_2092tps   A209221SAISQAEDPESAAHHHHTSS-HHHHHaaaaaxabaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dbt_A_2151dbt   A     U5PURIDINE-5'-MONOPHOSPHATE R - 215
1dbt_A_2151dbt   A     U5PURIDINE-5'-MONOPHOSPHATE S - 216
1dbt_A_2151dbt   A     U5PURIDINE-5'-MONOPHOSPHATE T - 218
1j7n_A_7331j7n   A     ZNZINC ION A - 734
1j7n_A_7331j7n   A     ZNZINC ION E - 735
1j7n_A_7331j7n   A     ZNZINC ION A - 738
1m0u_A_1281m0u   A     GTTGLUTATHIONE N - 142
1m0u_A_1281m0u   A     GTTGLUTATHIONE R - 145
1oaa_*_2051oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE D - 205
1oaa_*_2051oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 206
1oaa_*_2051oaa   *     OAAOXALOACETATE ION M - 206
1oaa_*_2051oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 207
1oaa_*_2051oaa   *     OAAOXALOACETATE ION Q - 207
1oaa_*_2051oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 208
1oaa_*_2051oaa   *     OAAOXALOACETATE ION Q - 208
1oaa_*_2051oaa   *     OAAOXALOACETATE ION A - 210
1oaa_*_2051oaa   *     OAAOXALOACETATE ION R - 211
1oaa_*_2051oaa   *     OAAOXALOACETATE ION L - 223
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE F - 67
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE F - 82
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE V - 83
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE M - 86
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE Y - 87
1q6o_A_1921q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE R - 192
1q6o_A_1921q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE S - 193
1q6o_A_1921q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE R - 195
1qsa_A_5721qsa   A     GOLGLYCEROL A - 572
1qsa_A_5721qsa   A     GOLGLYCEROL V - 573
1qsa_A_5721qsa   A     GOLGLYCEROL A - 574
1qsa_A_5721qsa   A     GOLGLYCEROL Y - 587
1qsa_A_5721qsa   A     GOLGLYCEROL Y - 594
1qsa_A_5721qsa   A     GOLGLYCEROL D - 595
1qsa_A_5721qsa   A     GOLGLYCEROL A - 596
1qsa_A_5721qsa   A     GOLGLYCEROL R - 599
1r2f_A_741r2f   A     FEFE (III) ION I - 94
1r2f_A_741r2f   A     FEFE (III) ION M - 97
1r2f_A_741r2f   A     FEFE (III) ION E - 98
1r2f_A_741r2f   A     FEFE (III) ION H - 101
1r2f_A_741r2f   A     FEFE (III) ION A - 102
1r2f_A_1291r2f   A     FEFE (III) ION E - 158
2tps_A_2092tps   A     TPSTHIAMIN PHOSPHATE S - 209
2tps_A_2092tps   A     TPSTHIAMIN PHOSPHATE A - 210

Clusters included in this Subclass
CLUSTER: HH.3.48
CLUSTER: HH.4.31
CLUSTER: HH.5.121
CLUSTER: HH.5.20
CLUSTER: HH.5.40