ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.6.1

Subclass Accession number: 9004
Subclass: 3.6.1

PSSM

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 11

Average sequence ID (%) : 11.0 +/- 12.5
Average RMSD (Å) : 0.782 +/- 0.194

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XXXXphX
(φψ)-conformation:	aabapaa

Pattern:	[acfilpv]	x	[aekrt]	x	x	[deksw]	[DNST]	[lmpv]	x	[adekq]	x	[ceknqrw]	x	x	x
Conservation:	-0.323	-1.053	0.758	-0.422	-1.132	0.150	2.745	0.605	-0.624	1.211	-0.231	-0.185	-0.759	-0.245	-0.497

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a6q_*_247	1a6q	-	257	271	RLEVTDDLEKVCNEV	HHTT---HHHHHHHH	aaaabaxaaaaaaaa
1ab4_*_390	1ab4	-	396	410	LIRHAPTPAEAKTAL	HHHH-SSHHHHHHHH	aaaaxabaaaaaaaa
1eg7_A_1204	1eg7	A	1208	1222	CLCLASDLMDLKERF	HHHH-SSHHHHHHHH	aaaaxabaaaaaaaa
1ekq_A_200	1ekq	A	207	221	FCAVEENPLFAAIAA	HHTT-SSHHHHHHHH	aaaabaxaaaaaaaa
1h0o_A_157	1h0o	A	181	195	IDTYIKDPKEREYLF	HHHH---HHHHHHHH	aaaabaxaaaaaaaa
1ii2_A_475	1ii2	A	475	489	PRKAWKDVRQFNETS	HHHH-S-HHHHHHHH	aaaaxabaaaaaaaa
1iuq_A_313	1iuq	A	316	330	IAATHKNPEEVREAY	HHHTSSSHHHHHHHH	aaaababaaaaaaaa
1oja_A_148	1oja	A	152	166	LDKLCWTESAKQLAT	HHHH-SSHHHHHHHH	aaaaxabaaaaaaaa
1ove_A_244	1ove	A	246	260	LLKKISSESARNYIQ	HHHH---HHHHHHHH	aaaaxaxaaaaaaaa
1pjs_A_151	1pjs	A	165	179	VKKQFATMGERRRFW	HHTT--SSSHHHHHH	aaaNbaxaaaaaaaa
1q16_A_115	1q16	A	124	138	AKALHSDPVEAWASI	HHTT-SSHHHHHHHH	aaaabaxaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ekq_A_200	1ekq	A	CSWCYSTEINE-S-DIOXIDE	L - 200
1ekq_A_200	1ekq	A	CSWCYSTEINE-S-DIOXIDE	T - 201
1ekq_A_200	1ekq	A	CSWCYSTEINE-S-DIOXIDE	S - 202
1ekq_A_200	1ekq	A	CSWCYSTEINE-S-DIOXIDE	V - 203
1h0o_A_157	1h0o	A	COCOBALT (II) ION	Q - 166
1h0o_A_157	1h0o	A	COCOBALT (II) ION	E - 170
1h0o_A_157	1h0o	A	COCOBALT (II) ION	H - 173
1iuq_A_313	1iuq	A	GOLGLYCEROL	E - 328
1iuq_A_313	1iuq	A	GOLGLYCEROL	S - 331
1iuq_A_313	1iuq	A	GOLGLYCEROL	K - 332
1iuq_A_313	1iuq	A	MSESELENOMETHIONINE	F - 335
1iuq_A_313	1iuq	A	GOLGLYCEROL	F - 335
1iuq_A_313	1iuq	A	MSESELENOMETHIONINE	D - 336
1iuq_A_313	1iuq	A	GOLGLYCEROL	D - 336
1iuq_A_313	1iuq	A	MSESELENOMETHIONINE	S - 337
1iuq_A_313	1iuq	A	MSESELENOMETHIONINE	V - 338
1oja_A_148	1oja	A	ISNISATIN	L - 171
1oja_A_148	1oja	A	ISNISATIN	C - 172
1pjs_A_151	1pjs	A	PGETRIETHYLENE GLYCOL	L - 151
1pjs_A_151	1pjs	A	SEPPHOSPHOSERINE	A - 155
1pjs_A_151	1pjs	A	SEPPHOSPHOSERINE	R - 162

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h0o_A_157	1h0o	A	CO1CO BINDING SITE FOR CHAIN A	Q - 166
1h0o_A_157	1h0o	A	CO1CO BINDING SITE FOR CHAIN A	E - 170
1oja_A_148	1oja	A	AC2ISN BINDING SITE FOR CHAIN A	L - 171

Clusters included in this Subclass

CLUSTER: HH.2.83

CLUSTER: HH.4.37

CLUSTER: HH.6.98