ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.19.1

Subclass Accession number: 9025
Subclass: 3.19.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 53.3 +/- 1.9
Average RMSD (Å) : 0.433 +/- 0.153

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	XWXGKpp
(φψ)-conformation:	aalgpaa

Pattern:	[R]	[A]	[L]	[Q]	[AS]	[S]	[AV]	[IL]	[KN]	[ART]	[W]	[GQ]	[G]	[K]	[EK]	[ES]	[GN]	[LV]	[AEK]	[AK]	[AG]	[QR]	[ER]	x	[FLY]	[LMV]	[HKQ]	[R]	[A]	[EKL]	[AM]	[N]	[S]	[L]	[A]
Conservation:	0.866	0.347	0.347	0.866	-0.412	0.347	-0.650	-0.159	-0.297	-1.153	3.982	-0.690	1.385	0.866	-0.145	-0.490	-0.132	-0.394	-1.038	-0.816	-0.482	-0.122	-0.398	-1.326	-0.519	-0.519	-0.692	0.866	0.347	-1.384	-0.826	1.385	0.347	0.347	0.347

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a5c_A_309	1a5c	A	309	343	RALQASVLNTWQGKKENVAKAREVLLQRAEANSLA	HHHHHHHHHHHTT-GGGHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaUgxaaaaaaaaaaaaaaaaaaaaa
1ado_A_303	1ado	A	303	337	RALQASALKAWGGKKENLKAAQEEYVKRALANSLA	HHHHHHHHHHHTT-GGGHHHHHHHHHHHHHHHHHH	aaaaaaaaaaavgxaaaaaaaaaaaaaaaaaaaaa
1f2j_A_313	1f2j	A	313	347	RALQSSAIKRWGGKESGVEAGRRAFMHRAKMNSLA	HHHHHHHHHHHTTSGGGHHHHHHHHHHHHHHHHHH	aaaaaaaaaaavvbaaaaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ado_A_303	1ado	A	13P1,3-DIHYDROXYACETONEPHOSPHATE	R - 303
1ado_A_303	1ado	A	13P1,3-DIHYDROXYACETONEPHOSPHATE	A - 304
1ado_A_303	1ado	A	13P1,3-DIHYDROXYACETONEPHOSPHATE	L - 305
1ado_A_303	1ado	A	13P1,3-DIHYDROXYACETONEPHOSPHATE	Q - 306

Clusters included in this Subclass