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Information on SUBCLASS 4.1.4
Subclass Accession number: 9034
Subclass: 4.1.4 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 9.8 +/- 11.5
Average RMSD (Å) : 0.517 +/- 0.147

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXcXhphp
(φψ)-conformation: aalabpaa
Pattern: [alpv][aegt]xx[afivy]x[ekmry][DGK]x[CILM][DKPRT][glpvy][ekq][adeq][FV]x[ADKQRS][AFILP][AILV]
Conservation:-0.686-0.801-0.824-0.163-0.548-0.548-0.5171.681-0.7011.331-0.097-1.4370.999-0.1952.232-0.4250.034-0.5981.263
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dqs_A_2871dqs   A299317AELARHLGILKGVAVSRIVHHHHHHTTSS-HHHHHHHHaaaaaaavabxaaaaaaaa
1e2k_A_1711e2k   A173191PAARYLMGSMTPQAVLAFVHHHHHHTTSS-HHHHHHHHaaaaaaavabxaaaaaaaa
1g5t_A_1291g5t   A129147LTYMVAYDYLPLEEVISALHHHHHHTTSS-HHHHHHHHaaaaaaalabxaaaaaaaa
1h5r_A_2541h5r   A255273EEIAFRKGFIDVEQVRKLAHHHHHHTTSS-HHHHHHHHaaaaaaavabbaaaaaaaa
1i7d_A_5691i7d   A577595VLTQISEKQCRYQDFMQPLHHHHHHTTSS-HHHHHHHHaaaaaaalabxaaaaaaaa
1l8a_A_8451l8a   A853871LGELAKRGEIDKKVVADAIHHHHHHTTSS-HHHHHHHHaaaaaaavabxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dqs_A_2871dqs   A     ZNZINC ION H - 287
1dqs_A_2871dqs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 287
1dqs_A_2871dqs   A     CRB[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID H - 287
1dqs_A_2871dqs   A     ZNZINC ION V - 291
1dqs_A_2871dqs   A     CRB[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID V - 291
1e2k_A_1711e2k   A     TMC1-[4-HYDROXY-5-(HYDROXYMETHYL)BICYCLO[3.1.0]HEX-2-YL]-5-METHYLPYRIMIDINE-2,4(1H,3H)-DIONE Y - 172
1e2k_A_1711e2k   A     TMC1-[4-HYDROXY-5-(HYDROXYMETHYL)BICYCLO[3.1.0]HEX-2-YL]-5-METHYLPYRIMIDINE-2,4(1H,3H)-DIONE P - 173
1e2k_A_1711e2k   A     TMC1-[4-HYDROXY-5-(HYDROXYMETHYL)BICYCLO[3.1.0]HEX-2-YL]-5-METHYLPYRIMIDINE-2,4(1H,3H)-DIONE R - 176
1g5t_A_1291g5t   A     MGMAGNESIUM ION Y - 131
1g5t_A_1291g5t   A     ATPADENOSINE-5'-TRIPHOSPHATE Y - 131
1h5r_A_2541h5r   A     THMTHYMIDINE E - 256
1h5r_A_2541h5r   A     THMTHYMIDINE I - 257
1h5r_A_2541h5r   A     THMTHYMIDINE R - 260
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h5r_A_2541h5r   A THMTHM BINDING SITE FOR CHAIN DE - 256

Clusters included in this Subclass
CLUSTER: HH.4.81
CLUSTER: HH.5.101