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Information on SUBCLASS 4.8.1
Subclass Accession number: 9050
Subclass: 4.8.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 13.3 +/- 12.9
Average RMSD (Å) : 0.867 +/- 0.388

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXphXpXX
(φψ)-conformation: aaplppaa
Pattern: [lwy][aer][imt][aiklt][cgkl][EKQR][fgl][fklmv][DST][eknp][alt]x[ack][AQRS]x[fil][alt]
Conservation:0.0130.043-0.070-0.925-1.1612.539-0.845-0.6151.752-0.3780.287-0.8370.0720.605-1.1960.6730.045
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dqu_A_3241dqu   A331347YLTQSKGKSNLEARAIAHHHHHTT--HHHHHHHHaaaaapvxxaaaaaaaa
1ihu_A_3871ihu   A399415LETKGKELDEAGKRLLEHHHHHTT--HHHHHHHHaaaaapvxxaaaaaaaa
1mpg_A_1131mpg   A119135RAILGQLVSVAMAAKLTHHHHTTTS-HHHHHHHHaaaaaxUbxaaaaaaaa
1ps1_A_1151ps1   A124140WRRTCEGMTPAWCARSAHHHHHTTS-HHHHHHHHaaaaapvxxaaaaaaaa
1qr0_A_1161qr0   A116132LEIAKRFFSKTEYSDLLHHHHSSSS-HHHHHHHHaxgaabNbxaaaaaaaa
2frv_B_452frv   B4561LEMILKGRDPRDAQHFTHHHHHTTS-HHHHHHHHaaaaapvxxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ihu_A_3871ihu   A     CDCADMIUM ION P - 387
1ihu_A_3871ihu   A     CDCADMIUM ION H - 388
1ihu_A_3871ihu   A     CDCADMIUM ION E - 389
1ihu_A_3871ihu   A     CDCADMIUM ION H - 397
1ihu_A_3871ihu   A     CDCADMIUM ION T - 401
1ihu_A_3871ihu   A     CDCADMIUM ION E - 416
1ihu_A_3871ihu   A     CDCADMIUM ION D - 417
2frv_B_452frv   B     OOXYGEN ATOM E - 46
2frv_B_452frv   B     MO3MAGNESIUM ION, 3 WATERS COORDINATED E - 46

Clusters included in this Subclass
CLUSTER: HH.4.137
CLUSTER: HH.5.58