Information on SUBCLASS 4.8.1 |
Subclass Accession number: 9050
Subclass: 4.8.1 Type: HH alpha-alpha DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 13.3 +/- 12.9 Average RMSD (Å) : 0.867 +/- 0.388 Consensus geometry
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Consensus Sequence: | XXphXpXX |
(φψ)-conformation: | aaplppaa |
Pattern: | [lwy] | [aer] | [imt] | [aiklt] | [cgkl] | [EKQR] | [fgl] | [fklmv] | [DST] | [eknp] | [alt] | x | [ack] | [AQRS] | x | [fil] | [alt] |
Conservation: | 0.013 | 0.043 | -0.070 | -0.925 | -1.161 | 2.539 | -0.845 | -0.615 | 1.752 | -0.378 | 0.287 | -0.837 | 0.072 | 0.605 | -1.196 | 0.673 | 0.045 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dqu_A_324 | 1dqu | A | 331 | 347 | YLTQSKGKSNLEARAIA | HHHHHTT--HHHHHHHH | aaaaapvxxaaaaaaaa |
1ihu_A_387 | 1ihu | A | 399 | 415 | LETKGKELDEAGKRLLE | HHHHHTT--HHHHHHHH | aaaaapvxxaaaaaaaa |
1mpg_A_113 | 1mpg | A | 119 | 135 | RAILGQLVSVAMAAKLT | HHHHTTTS-HHHHHHHH | aaaaaxUbxaaaaaaaa |
1ps1_A_115 | 1ps1 | A | 124 | 140 | WRRTCEGMTPAWCARSA | HHHHHTTS-HHHHHHHH | aaaaapvxxaaaaaaaa |
1qr0_A_116 | 1qr0 | A | 116 | 132 | LEIAKRFFSKTEYSDLL | HHHHSSSS-HHHHHHHH | axgaabNbxaaaaaaaa |
2frv_B_45 | 2frv | B | 45 | 61 | LEMILKGRDPRDAQHFT | HHHHHTTS-HHHHHHHH | aaaaapvxxaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ihu_A_387 | 1ihu | A | CDCADMIUM ION | P - 387 |
1ihu_A_387 | 1ihu | A | CDCADMIUM ION | H - 388 |
1ihu_A_387 | 1ihu | A | CDCADMIUM ION | E - 389 |
1ihu_A_387 | 1ihu | A | CDCADMIUM ION | H - 397 |
1ihu_A_387 | 1ihu | A | CDCADMIUM ION | T - 401 |
1ihu_A_387 | 1ihu | A | CDCADMIUM ION | E - 416 |
1ihu_A_387 | 1ihu | A | CDCADMIUM ION | D - 417 |
2frv_B_45 | 2frv | B | OOXYGEN ATOM | E - 46 |
2frv_B_45 | 2frv | B | MO3MAGNESIUM ION, 3 WATERS COORDINATED | E - 46 |
Clusters included in this Subclass |
CLUSTER: HH.4.137 |
CLUSTER: HH.5.58 |