ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.19.1

Subclass Accession number: 9067
Subclass: 4.19.1

PSSM

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 6

Average sequence ID (%) : 40.0 +/- 24.4
Average RMSD (Å) : 0.433 +/- 0.186

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	ppGpYPpX
(φψ)-conformation:	aalbppaa

Pattern:	[DGP]	[LW]	[FY]	[LM]	[dehnq]	[P]	[ILV]	[TVY]	[fkqr]	[G]	[DERST]	[Y]	[P]	[EFKQ]	x	[LMV]	x	[DESY]	[FLTW]	[AFVY]
Conservation:	-0.606	1.115	0.856	0.156	-0.787	1.699	-0.018	-0.592	-0.908	1.292	-0.799	1.699	1.699	-0.709	-0.934	-0.013	-0.867	-0.693	-0.746	-0.843

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cbg_*_280	1cbg	-	280	299	GWFMHPLTKGRYPESMRYLV	HHHHHHHHHSS--HHHHHHH	aaaaaaaaavbxwaaaaaaa
1e4i_A_248	1e4i	A	248	267	DWFLQPIYQGSYPQFLVDWF	HHHHHHHHHSS--HHHHHHH	aaaaaaaaavbxpaxgaaaa
1e4m_M_284	1e4m	M	284	303	GWFMGPLTNGTYPQIMIDTV	HHHHHHHHHSS--HHHHHHH	aaaaaaaaavbxwaaaaaaa
1h49_A_287	1h49	A	287	306	GWFLEPVVRGDYPFSMRSLA	HHHHHHHHHSS--HHHHHHH	aaaaaaaaavbxwaaaaaaa
1od0_A_249	1od0	A	249	268	PLFLNPIYRGDYPELVLEFA	HHHHHHHHHSS--HHHHHHH	aaaaaaaaavbxxaaaaaaa
1qox_A_248	1qox	A	248	267	DWYLDPIYFGEYPKFMLDWY	HHHHHHHHTSS--HHHHHHH	aaaaaaaaavbxpaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	G - 288
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	N - 292
1e4m_M_284	1e4m	M	FUCFUCOSE	N - 292
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	G - 293
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	T - 294
1e4m_M_284	1e4m	M	FUCFUCOSE	T - 294
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	Y - 295
1e4m_M_284	1e4m	M	FUCFUCOSE	Y - 295
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	P - 296
1e4m_M_284	1e4m	M	FUCFUCOSE	P - 296
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	Q - 297
1e4m_M_284	1e4m	M	FUCFUCOSE	Q - 297
1e4m_M_284	1e4m	M	MANALPHA-D-MANNOSE	Q - 297
1e4m_M_284	1e4m	M	NAGN-ACETYL-D-GLUCOSAMINE	I - 300
1e4m_M_284	1e4m	M	MANALPHA-D-MANNOSE	I - 300
1e4m_M_284	1e4m	M	MANALPHA-D-MANNOSE	D - 301

Clusters included in this Subclass

CLUSTER: HH.3.69

CLUSTER: HH.4.65