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Information on SUBCLASS 5.2.1
Subclass Accession number: 9095
Subclass: 5.2.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 28

Average sequence ID (%) : 16.3 +/- 19.3
Average RMSD (Å) : 0.632 +/- 0.338

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXXhphpXX
(φψ)-conformation: aabaappaa
Pattern: [afiltv]xxxx[dekps][dehknqrstw][agilvw][dgnpst]x[adegkqrst][adegqrst][afiklmv]
Conservation:1.3010.113-0.460-0.9270.1041.722-0.711-0.4191.322-1.774-0.677-0.0580.462
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
153l_*_110153l   -127139IQKKFPSWTKDQQHHHH-TTS-HHHHaaaabaaxxaaaa
1ab4_*_1871ab4   -196208AYIDDEDISIEGLHHHH-TT--HHHHaaaabaaxxaaaa
1apx_A_741apx   A8496IKEQFPIVSYADFHHHT-TTS-HHHHaaaabaaxxaaaa
1bh6_A_2201bh6   A234246ILSKYPTLSASQVHHHHSTT--HHHHaaaabaaxxaaaa
1cse_E_2201cse   E234246ILSKHPNLSASQVHHHH-TT--HHHHaaaabaaxxaaaa
1cvu_A_2961cvu   A316328LKQEHPEWGDEQLHHHH-TT--HHHHaaaabaaxbaaaa
1d2v_C_2441d2v   C264276LKSLNPRWDGERLHHHH-TT--HHHHaaaabaapxaaaa
1dnp_A_3591dnp   A366378FMSQLIDGDLAANHHTT-TT--HHHHaaaaxaapbaaaa
1ea5_A_3491ea5   A356368VKLSVPHANDLGLHHHHSTT--HHHHaaaabaaxxaaaa
1eqg_A_2961eqg   A316328LKAEHPTWGDEQLHHHH-TT--HHHHaaaabaaxxaaaa
1exn_A_271exn   A3446FKHNNSKKPFASSHHHH-SSS--HHHaaaabaaxwaaaa
1f5a_A_2531f5a   A256268TCQLYPNAIASTLHHHHSTT--HHHHaaaabaaxbaaaa
1fcq_A_1271fcq   A137149VRREHPFWDDQRVHHHH-TTS-HHHHaaaabaaxxaaaa
1fpz_A_1461fpz   A155167LLYLSDTISPEQAHHHH-SS--HHHHaaaabaaxxaaaa
1gci_*_2201gci   -234246VKQKNPSWSNVQIHHHH-TT--HHHHaaaabaaxxaaaa
1jdr_A_861jdr   A95107IHKEFPWISSGDLHHHH-TTS-HHHHaaaabaaxxaaaa
1js3_A_1481js3   A167179LQAASPGLTQGAVHHHHSTT--HHHHaaaabaaxxaaaa
1llf_A_3551llf   A362374FKQSFIHASDAEIHHHH-TT--HHHHaaaabaaxxaaaa
1lpp_*_3551lpp   -362374FKQSFVHASDAEIHHHH-TT--HHHHaaaabaaxxaaaa
1lw6_E_2201lw6   E234246ILSKHPNWTNTQVHHHH-TT--HHHHaaaabaaxxaaaa
1mee_A_2201mee   A234246ILSKHPTWTNAQVHHHH-TT--HHHHaaaabaaxxaaaa
1n3l_A_751n3l   A7890AYLDNMKAPWELLHHHTTTTS-HHHHaaaabaappaaaa
1n5m_A_3561n5m   A363375VRIGVPQASDLAAHHHHSTT--HHHHaaaabaaxxaaaa
1ot5_A_3881ot5   A398410LLEANPNLTWRDVHHHH-TT--HHHHaaaabaaxxaaaa
1p0i_A_3471p0i   A354366LKIFFPGVSEFGKHHHH-TT--HHHHaaaabaaxpaaaa
1p8j_A_3671p8j   A381393TLEANKNLTWRDMHHHH-TT--HHHHaaaabaaxxaaaa
1pme_*_2751pme   -275287WNRLFPNADSKALHHHH-TTS-HHHHaaaabaaxxaaaa
1qnf_*_3671qnf   -374386FMQHLVDGDLAANHHTT-TT--HHHHaaaaxaapbaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bh6_A_2201bh6   A     1BHN-BENZYLOXYCARBONYL-ALA-PRO-3-AMINO-4-PHENYL-BUTAN-2-OL T - 220
1bh6_A_2201bh6   A     1BHN-BENZYLOXYCARBONYL-ALA-PRO-3-AMINO-4-PHENYL-BUTAN-2-OL S - 221
1bh6_A_2201bh6   A     1BHN-BENZYLOXYCARBONYL-ALA-PRO-3-AMINO-4-PHENYL-BUTAN-2-OL M - 222
1cse_E_2201cse   E     CACALCIUM ION R - 247
1cvu_A_2961cvu   A     ACDARACHIDONIC ACID V - 344
1cvu_A_2961cvu   A     ACDARACHIDONIC ACID I - 345
1d2v_C_2441d2v   C     HEMPROTOPORPHYRIN IX CONTAINING FE E - 245
1d2v_C_2441d2v   C     HEMPROTOPORPHYRIN IX CONTAINING FE L - 246
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 366
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 367
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 370
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 372
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 373
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 374
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 375
1dnp_A_3591dnp   A     MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID L - 375
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 377
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 378
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 379
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 380
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 381
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE W - 382
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE W - 384
1dnp_A_3591dnp   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 385
1exn_A_271exn   A     MSESELENOMETHIONINE I - 51
1exn_A_271exn   A     MSESELENOMETHIONINE L - 54
1exn_A_271exn   A     MSESELENOMETHIONINE A - 55
1exn_A_271exn   A     MSESELENOMETHIONINE K - 56
1exn_A_271exn   A     MSESELENOMETHIONINE S - 57
1f5a_A_2531f5a   A     MSESELENOMETHIONINE V - 253
1f5a_A_2531f5a   A     MSESELENOMETHIONINE A - 254
1f5a_A_2531f5a   A     MSESELENOMETHIONINE R - 255
1f5a_A_2531f5a   A     MSESELENOMETHIONINE T - 256
1f5a_A_2531f5a   A     MSESELENOMETHIONINE F - 276
1js3_A_1481js3   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 148
1js3_A_1481js3   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 149
1js3_A_1481js3   A     PLPPYRIDOXAL-5'-PHOSPHATE E - 150
1js3_A_1481js3   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 152
1llf_A_3551llf   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 357
1llf_A_3551llf   A     NAGN-ACETYL-D-GLUCOSAMINE A - 358
1llf_A_3551llf   A     NAGN-ACETYL-D-GLUCOSAMINE A - 360
1llf_A_3551llf   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 361
1llf_A_3551llf   A     F23TRICOSANOIC ACID Y - 361
1llf_A_3551llf   A     F23TRICOSANOIC ACID F - 362
1llf_A_3551llf   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 364
1llf_A_3551llf   A     F23TRICOSANOIC ACID S - 365
1llf_A_3551llf   A     F23TRICOSANOIC ACID F - 366
1llf_A_3551llf   A     F23TRICOSANOIC ACID L - 377
1lpp_*_3551lpp   *     HDS1-HEXADECANOSULFONIC ACID Y - 361
1lpp_*_3551lpp   *     HDS1-HEXADECANOSULFONIC ACID F - 362
1lpp_*_3551lpp   *     HDS1-HEXADECANOSULFONIC ACID S - 365
1lpp_*_3551lpp   *     HDS1-HEXADECANOSULFONIC ACID F - 366
1lw6_E_2201lw6   E     SULSULFATE ANION Q - 245
1lw6_E_2201lw6   E     SULSULFATE ANION S - 248
1lw6_E_2201lw6   E     SULSULFATE ANION S - 249
1lw6_E_2201lw6   E     SULSULFATE ANION E - 251
1n5m_A_3561n5m   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 358
1n5m_A_3561n5m   A     IODIODIDE ION P - 368
1n5m_A_3561n5m   A     IODIODIDE ION Q - 369
1n5m_A_3561n5m   A     P6GHEXAETHYLENE GLYCOL E - 376
1n5m_A_3561n5m   A     P6GHEXAETHYLENE GLYCOL A - 377
1n5m_A_3561n5m   A     P6GHEXAETHYLENE GLYCOL L - 380
1n5m_A_3561n5m   A     P6GHEXAETHYLENE GLYCOL H - 381
1n5m_A_3561n5m   A     P6GHEXAETHYLENE GLYCOL Y - 382
1ot5_A_3881ot5   A     NAGN-ACETYL-D-GLUCOSAMINE E - 400
1p0i_A_3471p0i   A     NAGN-ACETYL-D-GLUCOSAMINE E - 349
1p0i_A_3471p0i   A     SULSULFATE ANION H - 372
1p8j_A_3671p8j   A     ARMDEOXY-METHYL-ARGININE T - 367
1p8j_A_3671p8j   A     CACALCIUM ION T - 367
1p8j_A_3671p8j   A     ARMDEOXY-METHYL-ARGININE S - 368
1p8j_A_3671p8j   A     CACALCIUM ION S - 368
1p8j_A_3671p8j   A     ARMDEOXY-METHYL-ARGININE A - 369
1p8j_A_3671p8j   A     NAGN-ACETYL-D-GLUCOSAMINE A - 384
1p8j_A_3671p8j   A     NAGN-ACETYL-D-GLUCOSAMINE N - 385
1p8j_A_3671p8j   A     NAGN-ACETYL-D-GLUCOSAMINE K - 386
1p8j_A_3671p8j   A     NAGN-ACETYL-D-GLUCOSAMINE N - 387
1qnf_*_3671qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE F - 374
1qnf_*_3671qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE M - 375
1qnf_*_3671qnf   *     HDF8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE M - 375
1qnf_*_3671qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE L - 378
1qnf_*_3671qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE D - 380
1qnf_*_3671qnf   *     HDF8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE G - 381
1qnf_*_3671qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE D - 382
1qnf_*_3671qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE L - 383
1qnf_*_3671qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE N - 386
1qnf_*_3671qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE N - 387
1qnf_*_3671qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE G - 388
1qnf_*_3671qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE G - 389
1qnf_*_3671qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE W - 390
1qnf_*_3671qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE W - 392
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bh6_A_2201bh6   A ACTACTIVE SITE.S - 221

Clusters included in this Subclass
CLUSTER: HH.4.7
CLUSTER: HH.5.4
CLUSTER: HH.6.1