ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.4.1

Subclass Accession number: 9102
Subclass: 5.4.1

PSSM

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 15.0 +/- 19.0
Average RMSD (Å) : 0.900 +/- 0.312

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 90-135

rho (°): 270-315

Consensus Sequence:	XXcXpLpXp
(φψ)-conformation:	aalbbppaa

Pattern:	[agltv]	[dgqrst]	x	[acfilv]	[ehnq]	[alvwy]	[fimvy]	x	x	x	x	[GNR]	x	[EKRTY]	[LW]	[ADENST]	[adpv]	[DEQT]	[eqrw]	[altv]
Conservation:	-0.875	-0.880	-0.940	-0.307	0.671	-0.288	0.179	-0.878	-0.629	-0.811	-0.115	2.315	-0.939	-0.053	2.125	0.377	-0.506	1.704	0.001	-0.148

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bvu_A_345	1bvu	A	349	368	VSYFEWVQNITGDYWTVEET	HHHHHHHHHHHS----HHHH	aaaaaaaaaaavxxxxaaaa
1di1_A_204	1di1	A	207	226	ALLSALMRFSMGLRLSADEL	HHHHHHHHHHHT----HHHH	aaaaaaaaaaavxbbxaaaa
1gtm_A_346	1gtm	A	350	369	VSYFEWVQNITGYYWTIEEV	HHHHHHHHHHH-----HHHH	aaaaaaaaaaavbxbxaaaa
1j99_A_191	1j99	A	192	211	GRTIEKICQFLGKTLEPEEL	HHHHHHHHHHHT----HHHH	aaaaaaaaaaavbbbxaaaa
1m2r_A_251	1m2r	A	251	270	TDGLNVYLNKYRIELDPQLE	HHHHHHHHHHTT----HHHH	aaaaaaaaaaalbbxxaaaa
1p80_A_552	1p80	A	552	571	LTLAQAVAKNLGIELTDDQL	HHHHHHHHHHHT----HHHH	aaaaaaaaaaavbbxxaaaa
1ryp_F_78	1ryp	F	89	108	RQQCNYSSLVFNRKLAVERA	HHHHHHHHHHHS----HHHH	aaaaaaaaaaalbxpxaaaa
2occ_A_385	2occ	A	391	410	GGFVHWFPLFSGYTLNDTWA	HHHHHHHHHHHSB---HHHH	aaaaaaaaaaavbbxxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1j99_A_191	1j99	A	HGIMERCURY (II) IODIDE	E - 196
1j99_A_191	1j99	A	HGIMERCURY (II) IODIDE	C - 199
1j99_A_191	1j99	A	HGIMERCURY (II) IODIDE	Q - 200
1j99_A_191	1j99	A	HGIMERCURY (II) IODIDE	G - 203
1j99_A_191	1j99	A	HGIMERCURY (II) IODIDE	K - 204
1j99_A_191	1j99	A	HGIMERCURY (II) IODIDE	T - 205
1j99_A_191	1j99	A	HGIMERCURY (II) IODIDE	L - 206
2occ_A_385	2occ	A	HEAHEME-A	A - 385
2occ_A_385	2occ	A	HEAHEME-A	V - 386
2occ_A_385	2occ	A	HEAHEME-A	I - 389
2occ_A_385	2occ	A	HEAHEME-A	M - 390
2occ_A_385	2occ	A	HEAHEME-A	F - 393
2occ_A_385	2occ	A	HEAHEME-A	M - 417
2occ_A_385	2occ	A	HEAHEME-A	V - 421
2occ_A_385	2occ	A	HEAHEME-A	T - 424
2occ_A_385	2occ	A	HEAHEME-A	F - 425

Clusters included in this Subclass

CLUSTER: HH.6.18