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Information on SUBCLASS 5.6.1
Subclass Accession number: 9108
Subclass: 5.6.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 18.2 +/- 21.3
Average RMSD (Å) : 0.675 +/- 0.167

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XpcXhXpXp
(φψ)-conformation: aalababaa
Pattern: [ader]xxx[ADEKRS][dehkns][GNR]x[FIY][aknqr][KST][dkpr][AEK][adv][AEFK][aeqr]xxx
Conservation:0.202-0.803-1.162-0.695-0.091-0.5552.203-0.1411.657-0.2421.611-0.4351.565-0.224-0.479-0.329-0.578-0.306-1.198
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e6i_A_3741e6i   A378396EIKLESNKYQKMEDFIYDAHHHHHTT--SSHHHHHHHHaaaaaavababaaaaaaaa
1eqf_A_14271eqf   A14311449RENVRKRLYPSREEFREHLHHHHHTT--SSHHHHHHHHaaaaaalababaaaaaaaa
1i1n_A_91i1n   A1432HNLRKNGIIKTDKVFEVMLHHHHHTTS--SHHHHHHHHaaaaaavaxabaaaaaaaa
1icr_A_921icr   A100118DQEDADGRFATPEAKAANDHHHHHTT--SSHHHHHHHHaaaaaavababaaaaaaaa
1jg1_A_151jg1   A2644EMLKAEGIIRSKEVERAFLHHHHHTTS--SHHHHHHHHaaaaaavaxabaaaaaaaa
1kqb_A_921kqb   A100118DQEEADGRFNTPEAKAANHHHHHHTT--SSHHHHHHHHaaaaaavababaaaaaaaa
1ps1_A_281ps1   A2846AWPRSLGLIRSDAAAERHLHHHHHTTS--SHHHHHHHHaaaaaavabaxaaaaaaaa
1r18_A_101r18   A1533RQLKDHGVIASDAVAQAMKHHHHHTTS---HHHHHHHHaaaaaavabaxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e6i_A_3741e6i   A     ALYN(6)-ACETYLLYSINE N - 402
1e6i_A_3741e6i   A     ALYN(6)-ACETYLLYSINE C - 403
1e6i_A_3741e6i   A     ALYN(6)-ACETYLLYSINE Y - 406
1icr_A_921icr   A     FMNFLAVIN MONONUCLEOTIDE E - 102
1icr_A_921icr   A     FMNFLAVIN MONONUCLEOTIDE R - 107
1icr_A_921icr   A     FMNFLAVIN MONONUCLEOTIDE R - 121
1icr_A_921icr   A     NIONICOTINIC ACID F - 124
1kqb_A_921kqb   A     BEZBENZOIC ACID F - 124

Clusters included in this Subclass
CLUSTER: HH.5.26