ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.8.1

Subclass Accession number: 9111
Subclass: 5.8.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 11

Average sequence ID (%) : 14.2 +/- 17.6
Average RMSD (Å) : 1.227 +/- 0.294

Consensus geometry

d (Å): 15

delta (°): 135-180

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XXGXXXXXp
(φψ)-conformation:	aalbppbaa

Pattern:	[acilmpv]	[AEGQRST]	[ekmry]	x	[afilmv]	[adekqr]	x	x	[GKN]	x	x	x	[gnpstv]	x	[ADEQS]	[cdehnst]	x	x	[adknqt]	[ilvy]	x	[afktv]	[afglv]
Conservation:	-0.121	0.401	-0.101	-0.889	-0.017	0.107	-0.324	0.464	3.847	0.070	0.042	-0.851	-0.101	-1.422	1.286	-0.354	-0.834	-0.348	-0.586	0.171	-0.082	0.030	-0.386

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ado_A_36	1ado	A	39	61	IAKRLQSIGTENTEENRRFYRQL	HHHHHHHTT----HHHHHHHHHH	aaaaaaaalbxxbaaaaaaaaaa
1b7y_B_408	1b7y	B	408	430	PEYANRLLGTSYPEAEQIAILKR	HHHHHHHHT----HHHHHHHHHH	aaaaaaaavbbxxaaaaaaaaaa
1ccw_B_440	1ccw	B	450	472	LQERAKFEGRDVSFQMVIDDIFA	HHHHHHHHTS---HHHHHHHHHH	aaaaaaaavbxxbaaaaaaaaaa
1cza_N_797	1cza	N	800	822	VRAILQQLGLNSTCDDSILVKTV	HHHHHHHHT----HHHHHHHHHH	aaaaaaaagbxxbaaaaaaaaaa
1f2j_A_46	1f2j	A	49	71	CSKRFAGIGLSNTAEHRRQYRAL	HHHHHHTTT----HHHHHHHHHH	aaaaaaaavxxxbaaaaaaaaaa
1fba_A_36	1fba	A	39	61	MGKRLQDIGVENTEDNRRAYRQL	HHHHHHHTT----HHHHHHHHHH	aaaaaaaalbxxbaaaaaaaaaa
1fcj_A_251	1fcj	A	258	280	ARRLMEEEGILAGISSGAAVAAA	HHHHHHHH-----HHHHHHHHHH	aaaaaaaavbxbxaaaaaaaaaa
1iqc_A_251	1iqc	A	256	278	ETMGRIQLNREFNKDEVSKIVAF	HHHHHHHH-----HHHHHHHHHH	aaaaaaaavbbxxaaaaaaaaaa
1jbq_A_328	1jbq	A	335	357	ARMLIAQEGLLCGGSAGSTVAVA	HHHHHHHS---B-HHHHHHHHHH	aaaaaaaavbxxbaaaaaaaaaa
1pwh_A_248	1pwh	A	255	277	IEKFVDDEKILVEPACGAALAAV	HHHHHHHHS----HHHHHHHHHH	aaaaaaaalbxbxaaaaaaaaaa
2fok_A_325	2fok	A	328	350	IQDNLKKLGFDEVIETIENDIKG	HHHHHHHTT----HHHHHHHHHH	aaaaaaaavbxbxaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ado_A_36	1ado	A	13P1,3-DIHYDROXYACETONEPHOSPHATE	R - 42
1ccw_B_440	1ccw	B	CNCCO-CYANOCOBALAMIN	I - 470
1ccw_B_440	1ccw	B	CNCCO-CYANOCOBALAMIN	F - 471
1fcj_A_251	1fcj	A	PLPPYRIDOXAL-5'-PHOSPHATE	S - 272
1fcj_A_251	1fcj	A	PLPPYRIDOXAL-5'-PHOSPHATE	S - 273
1iqc_A_251	1iqc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 251
1iqc_A_251	1iqc	A	CACALCIUM ION	Q - 253
1iqc_A_251	1iqc	A	MGMAGNESIUM ION	Q - 253
1iqc_A_251	1iqc	A	CACALCIUM ION	A - 254
1iqc_A_251	1iqc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 254
1iqc_A_251	1iqc	A	CACALCIUM ION	V - 255
1iqc_A_251	1iqc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 255
1iqc_A_251	1iqc	A	CACALCIUM ION	T - 257
1iqc_A_251	1iqc	A	CACALCIUM ION	M - 258
1iqc_A_251	1iqc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	M - 258
1iqc_A_251	1iqc	A	CACALCIUM ION	G - 259
1iqc_A_251	1iqc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 259
1iqc_A_251	1iqc	A	CACALCIUM ION	Q - 262
1iqc_A_251	1iqc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Q - 262
1iqc_A_251	1iqc	A	CACALCIUM ION	L - 263
1iqc_A_251	1iqc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 263
1iqc_A_251	1iqc	A	CACALCIUM ION	F - 267
1iqc_A_251	1iqc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 267
1iqc_A_251	1iqc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 275
1iqc_A_251	1iqc	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 279
1jbq_A_328	1jbq	A	PLPPYRIDOXAL-5'-PHOSPHATE	S - 349
1jbq_A_328	1jbq	A	PLPPYRIDOXAL-5'-PHOSPHATE	A - 350
1pwh_A_248	1pwh	A	PLVN-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN -4-YL}METHYL)-O-METHYL-L-SERINE	E - 267
1pwh_A_248	1pwh	A	PLVN-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN -4-YL}METHYL)-O-METHYL-L-SERINE	A - 269
1pwh_A_248	1pwh	A	PLVN-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN -4-YL}METHYL)-O-METHYL-L-SERINE	C - 270

Clusters included in this Subclass