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Information on SUBCLASS 5.21.1
Subclass Accession number: 9125
Subclass: 5.21.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 29.4 +/- 21.9
Average RMSD (Å) : 0.900 +/- 0.346

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: ppGpchpXp
(φψ)-conformation: aaeaappaa
Pattern: [ILV][GL]x[ITV][LV][AR][DE][EHY][G][DE][DN][AV][ET]x[DE][ES][IL]
Conservation:0.038-1.279-1.673-0.532-0.042-0.3400.838-0.2882.4820.9540.816-0.317-0.366-1.2790.810-0.1320.311
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cp2_A_561cp2   A5672VLDTLREEGEDVELDSIHHHHHHHHGGG--HHHHaaaaaaaaeaapbaaaa
1lfk_A_2091lfk   A210226IGAVVAEYGDDATDEELHHHHHHHHGGGS-HHHHaaaaaaaaeaaxxaaaa
1ued_A_2181ued   A219235LGMIVRDHGDNVTDEELHHHHHHHHGGGS-HHHHaaaaaaaaeaabxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1lfk_A_2091lfk   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 232
1lfk_A_2091lfk   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 233
1lfk_A_2091lfk   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 236
1ued_A_2181ued   A     PG4TETRAETHYLENE GLYCOL T - 240
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 241
1ued_A_2181ued   A     PG4TETRAETHYLENE GLYCOL A - 241
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 242
1ued_A_2181ued   A     PG4TETRAETHYLENE GLYCOL L - 242
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 243
1ued_A_2181ued   A     PG4TETRAETHYLENE GLYCOL L - 244
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 245
1ued_A_2181ued   A     PG4TETRAETHYLENE GLYCOL G - 245
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 246
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 247
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 249
1ued_A_2181ued   A     PG4TETRAETHYLENE GLYCOL T - 249
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 250
1ued_A_2181ued   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 253

Clusters included in this Subclass
CLUSTER: HH.4.181