Information on SUBCLASS 6.25.1 |
Subclass Accession number: 9154
Subclass: 6.25.1 Type: HH alpha-alpha DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 23.5 +/- 27.8 Average RMSD (Å) : 0.833 +/- 0.321 Consensus geometry
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Consensus Sequence: | LhXXXXhppp |
(φψ)-conformation: | aalpabbpaa |
Pattern: | [FG] | [EP] | [GW] | [AV] | [AD] | x | [AFG] | [LTV] | [IV] | [L] | [CFY] | [GNQ] | [IT] | [AR] | x | [IPV] | [DS] | [DNS] | [DQS] | x | [FI] | [AL] | [EFL] | [AY] | [AR] | [KL] | [AKL] |
Conservation: | -0.240 | 1.033 | 1.204 | 0.215 | -0.486 | -0.668 | -1.335 | -0.476 | 1.813 | 2.346 | 0.383 | -0.476 | -0.006 | 0.072 | 0.707 | -0.721 | 1.321 | 0.383 | -0.230 | -1.457 | 0.994 | -0.317 | -1.703 | -0.303 | -0.135 | -0.461 | -1.457 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1nd4_A_234 | 1nd4 | A | 234 | 260 | GEWADRFLVLYGIAAPDSQRIAFYRLL | HHHHHHHHHHHT-SS--HHHHHHHHHH | aaaaaaaaaaagbabpxaaaaaaaaaa |
1o0s_A_483 | 1o0s | A | 483 | 509 | FPGVALGTILFQIRHVDNDLFLLAAKK | HHHHHHHHHHHTBS---HHHHHHHHHH | aaaaaaaaaaalxabbbaaaaaaaaaa |
1pj3_A_471 | 1pj3 | A | 471 | 497 | FPGVALAVILCNTRHISDSVFLEAAKA | HHHHHHHHHHTT-S---HHHHHHHHHH | aaaaaaaaaaalxabbxaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1nd4_A_234 | 1nd4 | A | KANKANAMYCIN A | R - 258 |
1pj3_A_471 | 1pj3 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | L - 476 |
1pj3_A_471 | 1pj3 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | I - 479 |
1pj3_A_471 | 1pj3 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | L - 480 |
1pj3_A_471 | 1pj3 | A | MSESELENOMETHIONINE | C - 481 |
1pj3_A_471 | 1pj3 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | C - 481 |
1pj3_A_471 | 1pj3 | A | MSESELENOMETHIONINE | N - 482 |
1pj3_A_471 | 1pj3 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | N - 482 |
1pj3_A_471 | 1pj3 | A | MSESELENOMETHIONINE | T - 483 |
1pj3_A_471 | 1pj3 | A | MSESELENOMETHIONINE | R - 484 |
1pj3_A_471 | 1pj3 | A | MSESELENOMETHIONINE | H - 485 |
1pj3_A_471 | 1pj3 | A | MSESELENOMETHIONINE | I - 486 |
1pj3_A_471 | 1pj3 | A | MSESELENOMETHIONINE | S - 487 |
1pj3_A_471 | 1pj3 | A | MSESELENOMETHIONINE | D - 488 |
1pj3_A_471 | 1pj3 | A | MSESELENOMETHIONINE | S - 489 |
1pj3_A_471 | 1pj3 | A | MSESELENOMETHIONINE | V - 490 |
1pj3_A_471 | 1pj3 | A | MSESELENOMETHIONINE | L - 492 |
Clusters included in this Subclass |
CLUSTER: HH.6.120 |