ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 8.4.1

Subclass Accession number: 9178
Subclass: 8.4.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 6

Average sequence ID (%) : 59.0 +/- 23.8
Average RMSD (Å) : 0.300 +/- 0.126

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	pcKpThXGhTLX
(φψ)-conformation:	aapbpaagpbaa

Pattern:	[lp]	[AD]	[ILV]	[FY]	[ADK]	[KRS]	[IL]	[CKR]	[DN]	[KR]	[ekqt]	[T]	[GPS]	[nst]	[G]	[AFWY]	[ST]	[L]	[d]	[DQ]	[CIV]	[I]	[Q]	[ST]	[G]	[V]	[DE]
Conservation:	-1.417	-0.710	-0.143	1.263	-1.334	-0.583	0.076	-0.983	0.452	0.464	-1.543	1.247	-0.921	-1.169	1.857	-0.778	0.135	0.638	-1.110	-0.017	-0.507	0.638	1.247	0.045	1.857	0.638	0.654

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1crk_A_31	1crk	A	31	57	PAIYAKLRDKLTPNGYSLDQCIQTGVD	HHHHHHHTTBB-TT--BHHHHHHHHHH	aaaaaaaaaxbxaagxbaaaaaaaaaa
1m15_A_33	1m15	A	33	59	KDVFDSIKNKKTGMGATLLDVIQSGVE	HHHHHHHTT-B-TT--BHHHHHHHHHH	aaaaaaaaaxbxaavxbaaaaaaaaaa
1n16_A_36	1n16	A	36	62	LDIYKKLRDKETPSGFTLDDIIQTGVD	HHHHHHHTT---TT---HHHHHHHHHH	aaaaaaaaaxbxaavxbaaaaaaaaaa
1qh4_A_36	1qh4	A	36	62	LDLYKKLRDRQTSSGFTLDDVIQTGVD	HHHHHHHTT---TT---HHHHHHHHHH	aaaaaaaaaxbxaavxbaaaaaaaaaa
1qk1_A_31	1qk1	A	31	57	PAVYARLCDKTTPTGWTLDQCIQTGVD	HHHHHHHTT---TT---HHHHHHHHHH	aaaaaaaaaxbxaavxbaaaaaaaaaa
2crk_A_36	2crk	A	36	62	PDLYKKLRDKETPSGFTLDDVIQTGVD	HHHHHHHTT---TTS--HHHHHHHHHH	aaaaaaaaaxbxaagxbaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1m15_A_33	1m15	A	ARGARGININE	S - 56

Clusters included in this Subclass