Information on SUBCLASS 8.10.1 |
Subclass Accession number: 9184
Subclass: 8.10.1 Type: HH alpha-alpha DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 69.2 +/- -21.9 Average RMSD (Å) : 0.200 +/- 0.000 Consensus geometry
|
Consensus Sequence: | VXDPcGhXAWXA |
(φψ)-conformation: | aapaaeaaabaa |
Pattern: | [DT] | [DV] | [AD] | [I] | [ARS] | [C] | [A] | [K] | [R] | [V] | [V] | x | [D] | [P] | [KN] | [G] | [IM] | [GS] | [A] | [W] | [KV] | [A] | [W] | x | [KL] | [H] |
Conservation: | -0.659 | -1.067 | -0.899 | -0.087 | -1.024 | 1.598 | -0.087 | 0.250 | 0.250 | -0.087 | -0.087 | -1.061 | 0.587 | 0.924 | -0.462 | 0.587 | -0.493 | -0.613 | -0.087 | 2.272 | -1.015 | -0.087 | 2.272 | -1.188 | -0.996 | 1.261 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1lmq_*_89 | 1lmq | - | 89 | 114 | TVAIRCAKRVVLDPNGIGAWVAWRLH | HHHHHHHHHHTTSTTGGGG-HHHHHH | aaaaaaaaaaaaxaaeaaaxaaaaaa |
1qqy_A_89 | 1qqy | A | 89 | 114 | DDDIACAKRVVKDPNGMSAWVAWVKH | HHHHHHHHHHTTSTTGGGGSHHHHHH | aaaaaaaaaaaaxaaeaaabaaaaaa |
2eql_*_89 | 2eql | - | 89 | 114 | DDDISCAKRVVRDPKGMSAWKAWVKH | HHHHHHHHHHTTSTTGGGG-HHHHHH | aaaaaaaaaaaaxaaeaaabaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1lmq_*_89 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | R - 97 |
1lmq_*_89 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | V - 98 |
1lmq_*_89 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | D - 101 |
1lmq_*_89 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | P - 102 |
1lmq_*_89 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | N - 103 |
1lmq_*_89 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | A - 107 |
1lmq_*_89 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | W - 108 |
1lmq_*_89 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | V - 109 |
1lmq_*_89 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | A - 110 |
Clusters included in this Subclass |
CLUSTER: HH.9.31 |