ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 11.2.1

Subclass Accession number: 9235
Subclass: 11.2.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 9

Average sequence ID (%) : 63.5 +/- 23.3
Average RMSD (Å) : 0.411 +/- 0.093

Consensus geometry

d (Å): 25

delta (°): 90-135

theta (°): 45-90

rho (°): 315-360

Consensus Sequence:	hcXPYNcXppNIDXp
(φψ)-conformation:	aabpbbaaaplppaa

Pattern:	[C]	[AEL]	[AR]	[afit]	[itv]	[C]	[DN]	[C]	[D]	[r]	x	[A]	[A]	[FHIL]	[C]	[F]	[AGS]	[AGKN]	[AS]	[EP]	[Y]	[n]	[DEKN]	[AEGNT]	[DHN]	[kwy]	[N]	[IL]	[DN]	[LT]	[AKT]	[AKRST]	[FRY]
Conservation:	2.036	-0.885	-0.542	-1.042	-0.716	2.036	0.134	2.036	0.972	-0.587	-1.160	0.262	0.262	-0.854	2.036	0.972	-0.492	-0.889	-0.256	0.043	1.326	-0.464	-0.546	-0.985	-0.198	-0.976	0.972	-0.029	0.250	-0.415	-0.709	-0.854	-0.735

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bun_A_86	1bun	A	86	118	CARIVCDCDRTAALCFGNSEYIEGHKNIDTARF	HHHHHHHHHHHHHHHHHHS---GGGBT--HHHH	aaaaaaaaaaaaaaaaaabxxxaaaxvpxaaaa
1gp7_A_90	1gp7	A	91	123	CAAFICNCDRVAAHCFAASPYNNNNYNIDTTTR	HHHHHHHHHHHHHHHHHTS---GGGBT--HHHH	aaaaaaaaaaaaaaaaaabxbbaaaxlxxaaNa
1hn4_A_90	1hn4	A	91	123	CEAFICNCDRNAAICFSKAPYNKEHKNLDTKKY	HHHHHHHHHHHHHHHHHHS---GGGBT--HHHH	aaaaaaaaaaaaaaaaaaxxbbaaaxlxxaaNa
1m8t_A_90	1m8t	A	91	123	CAAFVCDCDRVAAICFAGAPYNKENINIDTTTR	HHHHHHHHHHHHHHHHHHS---GGGBS--HHHH	aaaaaaaaaaaaaaaaaabxbbaaaxlxxaaaa
1mh8_A_85	1mh8	A	86	118	CAATTCDCDRLAAICFAGAPYNDTNYNIDLKAR	HHHHHHHHHHHHHHHHHHS---GGGBT--HHHH	aaaaaaaaaaaaaaaaaaxxbxaaaxlxxaaaa
1ows_A_85	1ows	A	86	118	CAASSCDCDRLAAICFAGAPYNDNNYNIDLKAR	HHHHHHHHHHHHHHHHHHS---GGGBS--HHHH	aaaaaaaaaaaaaaaaaabpbxaaaxlxxaaaa
1ows_B_85	1ows	B	86	118	CAATTCDCDRLAAICFAGAPYNDTNYNIDLKSR	HHHHHHHHHHHHHHHHHHS---GGGBS--HHHH	aaaaaaaaaaaaaaaaaaxxbbaaabvxxaaaa
1poa_*_84	1poa	-	85	117	CAAAVCDCDRLAAICFAGAPYNDNDYNINLKAR	HHHHHHHHHHHHHHHHTTS---GGGBS--HHHH	aaaaaaaaaaaaaaaaaabxxbaaaxlxxaaaa
2not_A_90	2not	A	91	123	CLRFVCDCDVEAAFCFAKAPYNNANWNIDTKKR	HHHHHHHHHHHHHHHHHHS---GGGBT--HHHH	aaaaaaaaaaaaaaaaaaxwbxaaaxvxxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1hn4_A_90	1hn4	A	MJI1-HEXADECYL-3-TRIFLUOROETHYL-SN-GLYCERO-2-PHOSPHATE METHANE	D - 99
1hn4_A_90	1hn4	A	MJI1-HEXADECYL-3-TRIFLUOROETHYL-SN-GLYCERO-2-PHOSPHATE METHANE	A - 102
1hn4_A_90	1hn4	A	MJI1-HEXADECYL-3-TRIFLUOROETHYL-SN-GLYCERO-2-PHOSPHATE METHANE	F - 106
1ows_A_85	1ows	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 97
1ows_A_85	1ows	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 101
1ows_A_85	1ows	A	ZNZINC ION	N - 112
1ows_A_85	1ows	A	ZNZINC ION	I - 113
1ows_A_85	1ows	A	ZNZINC ION	L - 115
1poa_*_84	1poa	*	CACALCIUM ION	N - 111
1poa_*_84	1poa	*	CACALCIUM ION	I - 112
1poa_*_84	1poa	*	CACALCIUM ION	L - 114

Clusters included in this Subclass