ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 13.1.1

Subclass Accession number: 9247
Subclass: 13.1.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 62.0 +/- -10.4
Average RMSD (Å) : 0.267 +/- 0.058

Consensus geometry

d (Å): 23

delta (°): 135-180

theta (°): 45-90

rho (°): 135-180

Consensus Sequence:	hpYpHGpPIPpVEhXXE
(φψ)-conformation:	aapbpgpppppbpppaa

Pattern:	[NPQ]	[V]	[Y]	[R]	[AKQ]	[R]	[R]	[K]	x	[FI]	[A]	[DE]	[IL]	[A]	[FMY]	[NQ]	[Y]	[KR]	[H]	[G]	[DEQ]	[P]	[I]	[P]	[HKR]	[V]	[E]	[FY]	[MT]	[AE]	[E]	[E]	[IK]	[AK]	[T]	[W]	[GK]	[ET]	[V]	[FY]	x	[ET]	[L]	[KN]	[GKS]	[L]	[Y]	x	[T]	[H]
Conservation:	-1.212	-0.001	1.360	0.453	-1.212	0.453	0.453	0.453	-1.413	-0.595	-0.001	-0.066	-0.442	-0.001	-0.707	-0.511	1.360	-0.206	1.814	0.907	-0.606	1.360	-0.001	1.360	-0.808	-0.001	0.453	0.402	-0.865	-0.965	0.453	0.453	-1.462	-0.965	0.453	3.176	-0.956	-0.882	-0.001	0.323	-1.413	-0.869	-0.001	-0.571	-1.262	-0.001	1.360	-1.312	0.453	1.814

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1j8u_A_152	1j8u	A	152	201	PVYRARRKQFADIAYNYRHGQPIPRVEYMEEEKKTWGTVFKTLKSLYKTH	HHHHHHHHHHHHHHHH--TTS--------HHHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaaaaaaxbpgxxxpxbxxxaaaaaaaaaaaaaaaaaaaaa
1mlw_A_139	1mlw	A	139	188	NVYRKRRKYFADLAMNYKHGDPIPKVEFTEEEIKTWGTVFRELNKLYPTH	HHHHHHHHHHHHHHHH--TTS--------HHHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaaaaaaxbpgxxxpxbxxxaaaaaaaaaaaaaaaaaaaaa
1toh_*_198	1toh	-	198	247	QVYRQRRKLIAEIAFQYKHGEPIPHVEYTAEEIATWKEVYVTLKGLYATH	HHHHHHHHHHHHHHHH--TTS--------HHHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaaaaaaaxbpvxxxpxbxxxaaaaaaaaaaaaaaaaaaaaa

Clusters included in this Subclass