Logo
Information on SUBCLASS 14.2.1
Subclass Accession number: 9249
Subclass: 14.2.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 69.9 +/- -22.5
Average RMSD (Å) : 0.300 +/- 0.000

Consensus geometry
d (Å): 17 delta (°): 45-90 theta (°): 45-90 rho (°): 270-315
Consensus Sequence: VYGhPGFSKDNpShIpRX
(φψ)-conformation: aaNppgpbaabalpbbaa
Pattern: [ST][AY][F][L][V][Y][G][AV][P][G][F][S][K][D][N][EN][S][IL][I][ST][R][AK][EQ][F]x[AE][G][LV][KR][IV][FG]
Conservation:-0.763-1.2741.092-0.043-0.0431.6591.092-1.1461.6591.0921.092-0.0430.5241.0921.092-0.762-0.043-0.609-0.043-0.7630.524-1.330-0.3031.092-1.613-1.3301.092-0.892-0.325-0.318-1.456
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b41_A_3361b41   A336366SYFLVYGAPGFSKDNESLISRAEFLAGVRVGHHHHTTTSTT--SSS-----HHHHHHHHHHHaaaaaaNppvbbaabalxxbaaaaaaaaaaa
1n5m_A_3361n5m   A336366SYFLVYGVPGFSKDNESLISRAQFLAGVRIGHHHHTTT-TT--SSS-----HHHHHHHHHHHaaaaaaNbpgxbaabalxbxaaaaaaaaaaa
1p0i_A_3271p0i   A327357TAFLVYGAPGFSKDNNSIITRKEFQEGLKIFHHHHTTT-TT--TTS-----HHHHHHHHHHHaaaaaaNxxvxbaabalxbbaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b41_A_3361b41   A     NAGN-ACETYL-D-GLUCOSAMINE G - 342
1b41_A_3361b41   A     NAGN-ACETYL-D-GLUCOSAMINE A - 343
1b41_A_3361b41   A     NAGN-ACETYL-D-GLUCOSAMINE P - 344
1b41_A_3361b41   A     NAGN-ACETYL-D-GLUCOSAMINE G - 345
1b41_A_3361b41   A     NAGN-ACETYL-D-GLUCOSAMINE F - 346
1b41_A_3361b41   A     FUCFUCOSE S - 347
1b41_A_3361b41   A     NAGN-ACETYL-D-GLUCOSAMINE S - 347
1b41_A_3361b41   A     FUCFUCOSE D - 349
1b41_A_3361b41   A     NAGN-ACETYL-D-GLUCOSAMINE D - 349
1b41_A_3361b41   A     FUCFUCOSE N - 350
1b41_A_3361b41   A     NAGN-ACETYL-D-GLUCOSAMINE N - 350
1b41_A_3361b41   A     NAGN-ACETYL-D-GLUCOSAMINE E - 351
1b41_A_3361b41   A     NAGN-ACETYL-D-GLUCOSAMINE S - 352
1b41_A_3361b41   A     NAGN-ACETYL-D-GLUCOSAMINE L - 353
1b41_A_3361b41   A     NAGN-ACETYL-D-GLUCOSAMINE E - 358
1n5m_A_3361n5m   A     IODIODIDE ION F - 338
1n5m_A_3361n5m   A     GMN2,2',2"-[1,2,3-BENZENE-TRIYLTRIS(OXY)]TRIS[N,N,N-TRIETHYLETHANAMINIUM] F - 338
1n5m_A_3361n5m   A     IODIODIDE ION Y - 341
1n5m_A_3361n5m   A     GMN2,2',2"-[1,2,3-BENZENE-TRIYLTRIS(OXY)]TRIS[N,N,N-TRIETHYLETHANAMINIUM] Y - 341
1n5m_A_3361n5m   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 358
1p0i_A_3271p0i   A     BUABUTANOIC ACID F - 329
1p0i_A_3271p0i   A     NAGN-ACETYL-D-GLUCOSAMINE A - 334
1p0i_A_3271p0i   A     NAGN-ACETYL-D-GLUCOSAMINE P - 335
1p0i_A_3271p0i   A     NAGN-ACETYL-D-GLUCOSAMINE G - 336
1p0i_A_3271p0i   A     NAGN-ACETYL-D-GLUCOSAMINE F - 337
1p0i_A_3271p0i   A     NAGN-ACETYL-D-GLUCOSAMINE S - 338
1p0i_A_3271p0i   A     FUCFUCOSE S - 338
1p0i_A_3271p0i   A     NAGN-ACETYL-D-GLUCOSAMINE D - 340
1p0i_A_3271p0i   A     FUCFUCOSE D - 340
1p0i_A_3271p0i   A     NAGN-ACETYL-D-GLUCOSAMINE N - 341
1p0i_A_3271p0i   A     FUCFUCOSE N - 341
1p0i_A_3271p0i   A     NAGN-ACETYL-D-GLUCOSAMINE N - 342
1p0i_A_3271p0i   A     NAGN-ACETYL-D-GLUCOSAMINE S - 343
1p0i_A_3271p0i   A     NAGN-ACETYL-D-GLUCOSAMINE I - 344
1p0i_A_3271p0i   A     NAGN-ACETYL-D-GLUCOSAMINE E - 349

Clusters included in this Subclass
CLUSTER: HH.15.6