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Information on SUBCLASS 1.1.4
Subclass Accession number: 940
Subclass: 1.1.4 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 95

Average sequence ID (%) : 9.3 +/- 12.9
Average RMSD (Å) : 0.419 +/- 0.207

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: XhXXp
(φψ)-conformation: bbpaa
Pattern: xxx[acfgilmpvwy][adegnpqst]x[adegknqrst]xx
Conservation:-1.000-1.107-1.1770.7881.110-1.0771.1530.1530.156
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
16vp_A_28516vp   A285292.VPIEARRL.EE--HHHH.xxxxaaaa
1a9n_A_1481a9n   A148155.QKVKLKER.EE--HHHH.bpxxaaaa
1agj_A_2221agj   A226234GVGIGNYVKEEE--HHHHbbxxxaaaa
1aoe_A_1561aoe   A156164WTKQPKSELEEE--HHHHbbxxxaaaa
1b7g_O_1331b7g   O134142IRVVSCNTTEEE--HHHHbbxxxaaaa
1bkc_A_3921bkc   A392399.KTILTKEA.EE--HHHH.bxxxaaaa
1d3y_A_2991d3y   A299306.HPLKEQDI.EE--HHHH.bpxxaaaa
1dl5_A_551dl5   A5664STSSQPSLMEEE--HHHHbbxxxaaaa
1dmu_A_2301dmu   A238246ASVPNGLGLEEE--HHHHbbbpxaaaa
1dz4_A_2311dz4   A231238.RPITSDEA.EE--HHHH.bxxxaaaa
1dzf_A_1521dzf   A153161HIRLSSDEKEEE--HHHHbbxxxaaaa
1e29_A_181e29   A1826TTTLTARQFEEE--HHHHbbbxxaaaa
1e3m_A_4981e3m   A499507ERYIIPELKEEE--HHHHbbbbbaaaa
1e4f_T_1041e4f   T104111.RSITLDIL.EE--HHHH.bxxbaaaa
1f5n_A_2861f5n   A286293.IQVNGPRL.EE-BHHHH.xxxbaaaa
1f7u_A_4711f7u   A471478.YEFKWERM.EE--HHHH.bxxbaaaa
1fcq_A_2731fcq   A275283DTDLSRADLEEE--HHHHaxxxxaaaa
1fkn_A_2941fkn   A297305RITILPQQYEEEE-HHHHbbbbbaaaa
1fsg_A_2171fsg   A217225VAVLSDAAREEE--HHHHxbxxxaaaa
1fui_A_3581fui   A363371RTYWSPEAIEEEE-HHHHabbbxaaaa
1g0u_A_2211g0u   A221229FRKLTSQEIEEE--HHHHxbxxxaaaa
1g0u_B_2201g0u   B221229QKIFKPQEIEEE--HHHHxbxxxaaaa
1g0u_C_2201g0u   C221229IVALSSEEIEEE--HHHHbbbxxaaaa
1g0u_D_2201g0u   D221229FKIYDNEKTEEE--HHHHxbxxxaaaa
1g0u_G_2201g0u   G221229FFTLSAENIEEE--HHHHbbbxbaaaa
1g29_1_2641g29   1264272RLKLLPDQFEEE--HHHHbbxxxaaaa
1g3s_A_2091g3s   A210218DVELLDDLAEEE--HHHHbbxxxaaaa
1g8f_A_331g8f   A3442VWNLTPRQLEEE--HHHHbbxxxaaaa
1g8f_A_581g8f   A5865.GFLNENDY.EE--HHHH.bxxxaaaa
1g8p_A_1351g8p   A135142.FEPGLLAR.EE--HHHH.xbpbaaaa
1gkm_A_871gkm   A8896GAPLDDDLVEEE--HHHHexxxxaaaa
1gu7_A_1431gu7   A144152IKLPNPAQSEEE--HHHHbxbxxaaaa
1h65_A_2501h65   A250257.IFVDKNLI.EE--HHHH.bxxbaaaa
1h7s_A_2951h7s   A295303RPCDPAKVCEEE--HHHHxxbbxaaaa
1hxh_A_1851hxh   A185192.GIYTPMMQ.EE--HHHH.xgbbaaaa
1i1n_A_561i1n   A5664ATISAPHMHEEE--HHHHbbxxxaaaa
1i7d_A_461i7d   A4654LEQAQPDAYEEE--HHHHbbxxxaaaa
1iib_A_761iib   A7684VEVIDSLLYEEE--HHHHbbxxpaaaa
1iq6_A_101iq6   A1422SKRFGAAEVEEE--HHHHbbbxxaaaa
1iuh_A_21iuh   A614AVFLPEEVREEE--HHHHbbxbxaaaa
1j3b_A_4371j3b   A437444.YRFPLPVT.EE--HHHH.bxpxaaaa
1jg1_A_731jg1   A7380.TVSAPHMV.EE--HHHH.bxxxaaaa
1jhd_A_1191jhd   A120128IEEVSDEQMEEE--HHHHbbxxxaaaa
1jhd_A_331jhd   A3341SVVISSQAAEEE--HHHHbbxxxaaaa
1jhd_A_571jhd   A5764.GFMNVADA.EE--HHHH.exxxaaaa
1jhs_A_1681jhs   A175183NVPLTKEEAEEE--HHHHxbxxxaaaa
1jx4_A_1631jx4   A163171IKVIDDEEVEEE--HHHHbbbbxaaaa
1kw3_B_871kw3   B8794.TRGDEALM.EE--HHHH.bxpxaaaa
1l1l_A_441l1l   A4451.RSENWDET.EE--HHHH.bxpbaaaa
1l8r_A_2411l8r   A241248.VVCNVEQV.EE--HHHH.xxxxaaaa
1lhp_A_541lhp   A5462GQVLNSDELEEE--HHHHebbxxaaaa
1m1f_A_881m1f   A9098LERVPETIMEEE--HHHHabbxxaaaa
1m3y_A_2011m3y   A208216YIFLDTQEREEEE-HHHHbbbxxaaaa
1mzb_A_981mzb   A99107IEFMDAEIEEEE--HHHHbxbbbaaaa
1n62_B_2951n62   B296304KWVEDRMENEEE--HHHHxbbxxaaaa
1n7z_A_2071n7z   A208216IVVPWPEELEEE--HHHHbxbpxaaaa
1ne8_A_881ne8   A92100ITHLDDEMMEEE--HHHHabbxxaaaa
1nlf_A_2091nlf   A212220LSSMTSAEAEEE--HHHHbbpxxaaaa
1nnw_A_661nnw   A6775KIIRGKYDQEEE--HHHHbbbxbaaaa
1nul_A_41nul   A412KYIVTWDMLEEE--HHHHbxxbxaaaa
1nwc_A_1301nwc   A131139FVGGNCTVSEEE--HHHHbbxxpaaaa
1o6d_A_651o6d   A7381GEEVSSEEFEEE--HHHHxxxbxaaaa
1o94_A_1371o94   A137144.KEMDLSDI.EE--HHHH.xxxxaaaa
1ogs_A_801ogs   A8290GGAMTDAAAEEE--HHHHbbxxxaaaa
1olt_A_3571olt   A360368GIALTRDDCEEE--HHHHebxxxaaaa
1oyb_*_1581oyb   -158166QHSLTKDEIEEE--HHHHxbxxxaaaa
1oyg_A_441oyg   A4451.SHITRHDM.EE--HHHH.xbxxaaaa
1pcf_A_961pcf   A102110GISLNPEQWEEEE-HHHHbbbbxaaaa
1ps9_A_1291ps9   A129136.HELSHEEI.EE--HHHH.xxpbaaaa
1pvt_A_1201pvt   A122130VHTHPLNLLEEE--HHHHbbbbxaaaa
1pzx_A_2571pzx   A260268LSDIGSAIGEEE--HHHHbbxxxaaaa
1q06_A_371q06   A3744.RTYTQQHL.EE--HHHH.pbbbaaaa
1q74_A_2251q74   A226234VVEADEQAREEE--HHHHbbbxxaaaa
1q7h_A_51q7h   A512.HFISKKEA.EE--HHHH.bxxxaaaa
1qhl_A_1461qhl   A146153.RVLPLNEL.EE--HHHH.bxxxaaaa
1qj4_A_1411qj4   A145153GLKLGFTLLEEE--HHHHxbbpxaaaa
1qy6_A_1921qy6   A195203AVFINENVREEE--HHHHbxxxxaaaa
1r4p_A_1891r4p   A189196.YTMTPGDV.EE--HHHH.xbxxaaaa
1r6t_A_1101r6t   A110117.SKIDKELI.EE--HHHH.bxxxaaaa
1s68_A_1301s68   A130138VTYVDDYMMEEE--HHHHbbxxxaaaa
1sh0_A_1691sh0   A169175..LVKTDKI..EE-THHH..xbpaaaa
1sqh_A_101sqh   A1018LRPLSDSEVEEE--HHHHxbxxxaaaa
1stf_I_151stf   I1522.QPATAETQ.EE--HHHH.bxpbaaaa
1su4_A_5331su4   A534542RVPMTGPVKEEE--HHHHbbxxbaaaa
1ua4_A_321ua4   A3644IKYLDSKDLEEE--HHHHxbxpbaaaa
1uc2_A_3851uc2   A387395ILAGTEGAMEEE--HHHHbbbxbaaaa
1ufk_A_501ufk   A5159WEEVGDEDWEEE--HHHHxbxxbaaaa
1v47_A_3151v47   A315322.TAISMTKV.EE--HHHH.bxbbaaaa
1vhy_A_171vhy   A1725QCYLSEDAAEEE--HHHHbbxxxaaaa
1vio_A_2191vio   A219227YRPLTQSEIEEE--HHHHbbxxxaaaa
1vjl_A_1391vjl   A139146.IELEVNER.EE--HHHH.bxxxaaaa
2eng_*_1812eng   -186194QVQCPAELVEE---HHHHxbxxxaaaa
3pmg_A_843pmg   A9098NGILSTPAVEEE--HHHHvvxbxaaaa
3tgl_*_63tgl   -614IRAATSQEIEEE--HHHHbbxxxaaaa
4cd2_A_1694cd2   A169177WKKEKHSDLEEE--HHHHbbxxxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bkc_A_3921bkc   A     INN3,N(D,L-[2-(HYDROXYAMINO-CARBONYL)METHYL]-4-METHYL PENTANOYL)L-3-(TERT-BUTYL)GLYCYL-L-ALANINE L - 401
1bkc_A_3921bkc   A     INN3,N(D,L-[2-(HYDROXYAMINO-CARBONYL)METHYL]-4-METHYL PENTANOYL)L-3-(TERT-BUTYL)GLYCYL-L-ALANINE V - 402
1bkc_A_3921bkc   A     INN3,N(D,L-[2-(HYDROXYAMINO-CARBONYL)METHYL]-4-METHYL PENTANOYL)L-3-(TERT-BUTYL)GLYCYL-L-ALANINE T - 403
1bkc_A_3921bkc   A     ZNZINC ION H - 405
1bkc_A_3921bkc   A     INN3,N(D,L-[2-(HYDROXYAMINO-CARBONYL)METHYL]-4-METHYL PENTANOYL)L-3-(TERT-BUTYL)GLYCYL-L-ALANINE H - 405
1bkc_A_3921bkc   A     ZNZINC ION E - 406
1bkc_A_3921bkc   A     INN3,N(D,L-[2-(HYDROXYAMINO-CARBONYL)METHYL]-4-METHYL PENTANOYL)L-3-(TERT-BUTYL)GLYCYL-L-ALANINE E - 406
1bkc_A_3921bkc   A     ZNZINC ION H - 409
1bkc_A_3921bkc   A     INN3,N(D,L-[2-(HYDROXYAMINO-CARBONYL)METHYL]-4-METHYL PENTANOYL)L-3-(TERT-BUTYL)GLYCYL-L-ALANINE H - 409
1dl5_A_551dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE Y - 55
1dl5_A_551dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 56
1dl5_A_551dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE T - 57
1dl5_A_551dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 58
1dl5_A_551dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 59
1dl5_A_551dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE M - 64
1dmu_A_2301dmu   A     SEO2-MERCAPTOETHANOL L - 244
1dmu_A_2301dmu   A     SEO2-MERCAPTOETHANOL F - 247
1dz4_A_2311dz4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 244
1dz4_A_2311dz4   A     CAMCAMPHOR L - 244
1dz4_A_2311dz4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 245
1dz4_A_2311dz4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 246
1dz4_A_2311dz4   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 247
1dz4_A_2311dz4   A     CAMCAMPHOR V - 247
1dz4_A_2311dz4   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 248
1dz4_A_2311dz4   A     CAMCAMPHOR G - 248
1dz4_A_2311dz4   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 249
1e29_A_181e29   A     HECHEME C I - 32
1e29_A_181e29   A     CACALCIUM ION I - 32
1e29_A_181e29   A     HECHEME C F - 33
1e29_A_181e29   A     CACALCIUM ION F - 33
1e29_A_181e29   A     CACALCIUM ION V - 34
1e29_A_181e29   A     CACALCIUM ION D - 35
1e29_A_181e29   A     HECHEME C T - 36
1e29_A_181e29   A     CACALCIUM ION T - 36
1e3m_A_4981e3m   A     MSESELENOMETHIONINE R - 500
1e3m_A_4981e3m   A     MSESELENOMETHIONINE Y - 501
1e3m_A_4981e3m   A     MSESELENOMETHIONINE I - 502
1e3m_A_4981e3m   A     MSESELENOMETHIONINE I - 503
1e3m_A_4981e3m   A     MSESELENOMETHIONINE P - 504
1e3m_A_4981e3m   A     MSESELENOMETHIONINE K - 507
1e3m_A_4981e3m   A     MSESELENOMETHIONINE L - 535
1fui_A_3581fui   A     MNMANGANESE (II) ION F - 359
1fui_A_3581fui   A     MNMANGANESE (II) ION D - 361
1fui_A_3581fui   A     FOCFUCITOL D - 361
1fui_A_3581fui   A     FOCFUCITOL R - 363
1g8f_A_331g8f   A     CDCADMIUM ION T - 38
1g8f_A_331g8f   A     CDCADMIUM ION P - 39
1g8f_A_331g8f   A     CDCADMIUM ION R - 40
1g8f_A_331g8f   A     CDCADMIUM ION Q - 41
1g8f_A_331g8f   A     CDCADMIUM ION L - 42
1g8f_A_331g8f   A     CDCADMIUM ION C - 43
1g8f_A_331g8f   A     MGMAGNESIUM ION E - 46
1h65_A_2501h65   A     MSESELENOMETHIONINE K - 254
1h65_A_2501h65   A     MSESELENOMETHIONINE I - 257
1h7s_A_2951h7s   A     MSESELENOMETHIONINE N - 307
1h7s_A_2951h7s   A     MSESELENOMETHIONINE E - 308
1h7s_A_2951h7s   A     MSESELENOMETHIONINE V - 309
1h7s_A_2951h7s   A     MSESELENOMETHIONINE Y - 310
1i1n_A_561i1n   A     SAHS-ADENOSYL-L-HOMOCYSTEINE A - 56
1i1n_A_561i1n   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 58
1i1n_A_561i1n   A     SAHS-ADENOSYL-L-HOMOCYSTEINE H - 64
1iq6_A_101iq6   A     IOH2-PROPANOL, ISOPROPANOL K - 10
1jg1_A_731jg1   A     SAHS-ADENOSYL-L-HOMOCYSTEINE T - 73
1jg1_A_731jg1   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 74
1jg1_A_731jg1   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 75
1jg1_A_731jg1   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 80
1jx4_A_1631jx4   A     MSESELENOMETHIONINE K - 164
1jx4_A_1631jx4   A     CACALCIUM ION K - 164
1jx4_A_1631jx4   A     MSESELENOMETHIONINE V - 165
1jx4_A_1631jx4   A     MSESELENOMETHIONINE I - 166
1jx4_A_1631jx4   A     MSESELENOMETHIONINE E - 170
1jx4_A_1631jx4   A     MSESELENOMETHIONINE R - 173
1jx4_A_1631jx4   A     MSESELENOMETHIONINE L - 174
1l8r_A_2411l8r   A     MSESELENOMETHIONINE L - 254
1mzb_A_981mzb   A     ZNZINC ION V - 98
1mzb_A_981mzb   A     ZNZINC ION E - 100
1mzb_A_981mzb   A     ZNZINC ION M - 102
1mzb_A_981mzb   A     ZNZINC ION E - 105
1mzb_A_981mzb   A     ZNZINC ION I - 106
1mzb_A_981mzb   A     ZNZINC ION E - 107
1mzb_A_981mzb   A     ZNZINC ION R - 109
1mzb_A_981mzb   A     ZNZINC ION Q - 110
1n7z_A_2071n7z   A     MSESELENOMETHIONINE W - 212
1ne8_A_881ne8   A     1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL D - 101
1ne8_A_881ne8   A     1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL D - 104
1ne8_A_881ne8   A     1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL E - 105
1ne8_A_881ne8   A     1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL Q - 108
1nnw_A_661nnw   A     PTPLATINUM (II) ION M - 79
1pzx_A_2571pzx   A     PLMPALMITIC ACID I - 263
1pzx_A_2571pzx   A     PLMPALMITIC ACID A - 266
1pzx_A_2571pzx   A     PLMPALMITIC ACID I - 267
1pzx_A_2571pzx   A     PLMPALMITIC ACID H - 270
1pzx_A_2571pzx   A     PLMPALMITIC ACID A - 271
1q74_A_2251q74   A     PE42-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL A - 243
1q7h_A_51q7h   A     MSESELENOMETHIONINE R - 14
1q7h_A_51q7h   A     MSESELENOMETHIONINE I - 15
1q7h_A_51q7h   A     MSESELENOMETHIONINE W - 16
1q7h_A_51q7h   A     MSESELENOMETHIONINE E - 17
1qj4_A_1411qj4   A     GOLGLYCEROL L - 146
1qj4_A_1411qj4   A     GOLGLYCEROL L - 148
1r4p_A_1891r4p   A     FMTFORMIC ACID Y - 189
1r6t_A_1101r6t   A     GOLGLYCEROL K - 111
1r6t_A_1101r6t   A     MSESELENOMETHIONINE I - 112
1r6t_A_1101r6t   A     MSESELENOMETHIONINE L - 116
1r6t_A_1101r6t   A     MSESELENOMETHIONINE R - 119
1r6t_A_1101r6t   A     MSESELENOMETHIONINE I - 120
1ua4_A_321ua4   A     GLCGLUCOSE N - 32
1ua4_A_321ua4   A     GLCGLUCOSE I - 33
1ua4_A_321ua4   A     GLCGLUCOSE D - 34
1v47_A_3151v47   A     ADXADENOSINE-5'-PHOSPHOSULFATE I - 317
1v47_A_3151v47   A     ADXADENOSINE-5'-PHOSPHOSULFATE S - 318
1vhy_A_171vhy   A     MSESELENOMETHIONINE H - 27
1vhy_A_171vhy   A     MSESELENOMETHIONINE V - 28
1vhy_A_171vhy   A     MSESELENOMETHIONINE A - 29
3pmg_A_843pmg   A     MGMAGNESIUM ION T - 95
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1b7g_O_1331b7g   O CTOCATALYTIC SITE IN SUBUNIT OC - 139
1e29_A_181e29   A AC2CA BINDING SITE FOR CHAIN ZD - 35
1gu7_A_1431gu7   A BC7SO4 BINDING SITE FOR CHAIN AQ - 151

Clusters included in this Subclass
CLUSTER: EH.0.54
CLUSTER: EH.1.32
CLUSTER: EH.1.4
CLUSTER: EH.2.164
CLUSTER: EH.2.31
CLUSTER: EH.2.7
CLUSTER: EH.2.77
CLUSTER: EH.3.5
CLUSTER: EH.3.7