Logo
Information on SUBCLASS 1.1.8
Subclass Accession number: 944
Subclass: 1.1.8 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 45

Average sequence ID (%) : 8.4 +/- 12.9
Average RMSD (Å) : 0.411 +/- 0.151

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 225-270
Consensus Sequence: XhXXX
(φψ)-conformation: bbpaa
Pattern: xx[acfgilmpvy][dgknqrst]x[adegknqrst]xx
Conservation:-1.000-0.7530.2190.667-1.3801.634-0.5770.189
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aol_*_1871aol   -189196IQFTNAGKEEE-HHHHbbxxaaaa
1aq0_A_1421aq0   A142148.SFTGEAA.EE-HHHH.bxxaaaa
1b77_A_1141b77   A116123TEIKAEDLEEE-HHHHbbbxaaaa
1b8z_A_781b8z   A7986FKPGKALKEEE-HHHHbbxxaaaa
1bam_*_1381bam   -142149LMPIKQLAEEE-HHHHbbxxaaaa
1bio_*_1561bio   -161168PVLDRATCEEE-HHHHxxbpaaaa
1bja_A_681bja   A6976LIITGEAQEEE-HHHHbbxxaaaa
1byb_*_491byb   -5259VDVWWGIIEEEEHHHHbxbxaaaa
1dz4_A_3171dz4   A318325ILLPQMLSEEE-HHHHbxbxaaaa
1ejd_A_811ejd   A8187.SAPYDLV.EE-HHHH.bxxaaaa
1eq9_A_1561eq9   A161168IVHPQKQCEEE-HHHHbxxpaaaa
1ew0_A_1591ew0   A160167VSFNAAAVEEE-HHHHabbxaaaa
1ex0_A_5811ex0   A587594VLIQAGEYEEE-HHHHbxxxaaaa
1f1e_A_221f1e   A2228.RLSQDAK.EE-HHHH.xbxaaaa
1g41_A_3661g41   A367374IAFTTDAVEEE-HHHHbbbxaaaa
1gdn_A_1561gdn   A161168PIVSRATCEEE-HHHHxxbpaaaa
1gtm_A_3361gtm   A336343LQIPDFLCEEE-HHHHxbbpaaaa
1gtr_A_2071gtr   A207214IYPMYDFTEEE-HHHHbbxxaaaa
1gvk_B_1621gvk   B162168.TVDYAIC.EE-HHHH.xbxaaaa
1hhs_A_2261hhs   A226233MVADFEYAEEE-HHHHxbxxaaaa
1i2a_A_781i2a   A7885TVIRKEEIEEE-HHHHxbbxaaaa
1i40_A_1501i40   A154161GWENAEAAEEE-HHHHexbxaaaa
1itw_A_4551itw   A459466CQAKDAPIEEE-HHHHbbbxaaaa
1jb0_A_1831jb0   A183190RAPKLEWFEEE-HHHHbxpxaaaa
1jih_A_581jih   A6067IAVSYAAREEE-HHHHabbxaaaa
1jkg_B_5271jkg   B537544RNASSEEIEE--HHHHbxxxaaaa
1jpz_A_671jpz   A6976KNLSQALKEE--HHHHxbxxaaaa
1k7w_A_1641k7w   A167174QPIRWSQFEEEEHHHHbwbxaaaa
1n8n_A_891n8n   A8995.IPKEVAR.EE-HHHH.bxxaaaa
1nh0_A_841nh0   A8490.IIGRNLL.EE-HHHH.bxxaaaa
1nwz_A_391nwz   A4047LQYNAAEGEEE-HHHHabbxaaaa
1ny5_A_3741ny5   A374380.FIDRGEL.EE-HHHH.bbxaaaa
1nz0_A_821nz0   A8693VIPRKKLSEEE-HHHHbbxxaaaa
1o4y_A_2221o4y   A225232RTVTRAEIEEE-HHHHbbbbaaaa
1odm_A_2491odm   A251258INCGSYMAEEE-HHHHbbxbaaaa
1pn0_A_551pn0   A5561.GLQCRTL.EE-HHHH.bbxaaaa
1q8f_A_1841q8f   A185192VMMGLDLTEEE-HHHHbbxxaaaa
1qus_A_3231qus   A326333WYGLPNFYEEE-HHHHbxxbaaaa
1qzg_A_251qzg   A2633TFQSIRSSEEE-HHHHbbbxaaaa
1r94_A_41r94   A410.TLSDSAA.EE-HHHH.bbxaaaa
1ro2_A_2381ro2   A238244.TLSKTAK.EE-HHHH.bxxaaaa
1sbp_*_2791sbp   -279286KLFTIDEVEEE-HHHHxbbbaaaa
1st0_A_1481st0   A151158IRETGDDYEEE-HHHHbbxxaaaa
1v7c_A_2621v7c   A264271EAVTDEEIEEE-HHHHbbbxaaaa
4fiv_*_1014fiv   -101107.LLGRDNM.EE-HHHH.bxxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bio_*_1561bio   *     GOLGLYCEROL V - 162
1bio_*_1561bio   *     GOLGLYCEROL L - 163
1bio_*_1561bio   *     GOLGLYCEROL D - 164
1bio_*_1561bio   *     GOLGLYCEROL R - 165
1bio_*_1561bio   *     GOLGLYCEROL A - 166
1byb_*_491byb   *     GLCGLUCOSE M - 51
1byb_*_491byb   *     GLCGLUCOSE V - 52
1byb_*_491byb   *     GLCGLUCOSE D - 53
1byb_*_491byb   *     GLCGLUCOSE W - 55
1dz4_A_3171dz4   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 322
1dz4_A_3171dz4   A     CAMCAMPHOR Q - 322
1ejd_A_811ejd   A     HAICYCLOHEXYLAMMONIUM ION S - 81
1ew0_A_1591ew0   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 170
1f1e_A_221f1e   A     MSESELENOMETHIONINE D - 33
1f1e_A_221f1e   A     MSESELENOMETHIONINE F - 34
1gdn_A_1561gdn   A     GOLGLYCEROL K - 157
1gdn_A_1561gdn   A     GOLGLYCEROL I - 162
1gdn_A_1561gdn   A     GOLGLYCEROL V - 163
1gdn_A_1561gdn   A     GOLGLYCEROL S - 164
1i40_A_1501i40   A     CACALCIUM ION V - 150
1i40_A_1501i40   A     CACALCIUM ION K - 151
1i40_A_1501i40   A     CACALCIUM ION V - 152
1jb0_A_1831jb0   A     CACALCIUM ION R - 183
1jb0_A_1831jb0   A     CL1ALPHA CHLOROPHYLL A R - 183
1jb0_A_1831jb0   A     CL1ALPHA CHLOROPHYLL A P - 185
1jb0_A_1831jb0   A     CL1ALPHA CHLOROPHYLL A L - 187
1jb0_A_1831jb0   A     CACALCIUM ION W - 189
1jb0_A_1831jb0   A     CL1ALPHA CHLOROPHYLL A W - 189
1jb0_A_1831jb0   A     CACALCIUM ION F - 190
1jb0_A_1831jb0   A     CL1ALPHA CHLOROPHYLL A F - 190
1jpz_A_671jpz   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 69
1jpz_A_671jpz   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 70
1jpz_A_671jpz   A     140N-PALMITOYLGLYCINE S - 72
1jpz_A_671jpz   A     140N-PALMITOYLGLYCINE Q - 73
1jpz_A_671jpz   A     140N-PALMITOYLGLYCINE A - 74
1jpz_A_671jpz   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 75
1jpz_A_671jpz   A     140N-PALMITOYLGLYCINE L - 75
1jpz_A_671jpz   A     140N-PALMITOYLGLYCINE V - 78
1jpz_A_671jpz   A     140N-PALMITOYLGLYCINE F - 81
1jpz_A_671jpz   A     140N-PALMITOYLGLYCINE A - 82
1k7w_A_1641k7w   A     AS1ARGININOSUCCINATE A - 166
1nh0_A_841nh0   A     KI23-BENZYLOXYCARBONYLAMINO-2-HYDROXY-4-PHENYL-BUTYRIC ACID I - 84
1nwz_A_391nwz   A     HC44'-HYDROXYCINNAMIC ACID Y - 42
1nwz_A_391nwz   A     HC44'-HYDROXYCINNAMIC ACID E - 46
1nwz_A_391nwz   A     HC44'-HYDROXYCINNAMIC ACID T - 50
1ny5_A_3741ny5   A     PO4PHOSPHATE ION I - 375
1ny5_A_3741ny5   A     PO4PHOSPHATE ION D - 376
1ny5_A_3741ny5   A     PO4PHOSPHATE ION R - 377
1ny5_A_3741ny5   A     PO4PHOSPHATE ION G - 378
1nz0_A_821nz0   A     MSESELENOMETHIONINE F - 82
1nz0_A_821nz0   A     MSESELENOMETHIONINE D - 83
1odm_A_2491odm   A     FE2FE (II) ION N - 252
1pn0_A_551pn0   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 55
1pn0_A_551pn0   A     IPHPHENOL G - 55
1pn0_A_551pn0   A     IPHPHENOL L - 56
1q8f_A_1841q8f   A     GOLGLYCEROL L - 189
4fiv_*_1014fiv   *     1NI4-[2-(2-ACETYLAMINO-3-NAPHTHALEN-1-YL-PROPIONYLAMINO)-3-METHYL-BUTYRYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL) -PROPYL]-AMIDE L - 101

Clusters included in this Subclass
CLUSTER: EH.0.12
CLUSTER: EH.1.10
CLUSTER: EH.1.57
CLUSTER: EH.2.23
CLUSTER: EH.2.75