Information on SUBCLASS 1.2.2 |
Subclass Accession number: 97
Subclass: 1.2.2 Type: HE alpha-beta DB: ArchDB-KI |
Number of loops: 4 Average sequence ID (%) : 100.0 +/- 0.0 Average RMSD (Å) : 0.13 +/- 0.03 Consensus geometry
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Consensus Sequence: | PHIGG |
(φψ)-conformation: | aapbp |
Pattern: | [A] | [G] | [D] | [A] | [A] | [V] | [V] | [M] | [T] | [S] | [A] | [Q] | [I] | [T] | [M] | [G] | [M] | [P] | [Y] | [A] | [V] | [T] | [D] | [A] | [V] | [L] | [A] | [P] | [H] | [I] | [G] | [G] | [E] |
Conservation: | -0.873 | 0.873 | 0.873 | -0.873 | -0.873 | -0.873 | -0.873 | 0.000 | 0.000 | -0.873 | -0.873 | 0.000 | -0.873 | 0.000 | 0.000 | 0.873 | 0.000 | 1.746 | 1.746 | -0.873 | -0.873 | 0.000 | 0.873 | -0.873 | -0.873 | -0.873 | -0.873 | 1.746 | 2.619 | -0.873 | 0.873 | 0.873 | 0.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1kim_A_114 | 1kim | A | 114 | 146 | AGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGE | HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEEE | aaaaaaaaaaaaaaaaaaaaaaaaaaaaaxbxx |
1qhi_A_114 | 1qhi | A | 114 | 146 | AGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGE | HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEEE | aaaaaaaaaaaaaaaaaaaaaaaaaaaaaxbxp |
1vtk_*_114 | 1vtk | - | 114 | 146 | AGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGE | HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEEE | aaaaaaaaaaaaaaaaaaaaaaaaaaaaaxbpx |
2ki5_A_114 | 2ki5 | A | 114 | 146 | AGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGE | HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEEE | aaaaaaaaaaaaaaaaaaaaaaaaaaaaaxbxp |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1kim_A_114 | 1kim | A | THMTHYMIDINE | Q - 125 |
1kim_A_114 | 1kim | A | THMTHYMIDINE | M - 128 |
1kim_A_114 | 1kim | A | THMTHYMIDINE | G - 129 |
1kim_A_114 | 1kim | A | THMTHYMIDINE | Y - 132 |
1vtk_*_114 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | Q - 125 |
1vtk_*_114 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | M - 128 |
1vtk_*_114 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | G - 129 |
1vtk_*_114 | 1vtk | * | TMPTHYMIDINE-5'-PHOSPHATE | Y - 132 |
2ki5_A_114 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | M - 121 |
2ki5_A_114 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | Q - 125 |
2ki5_A_114 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | M - 128 |
2ki5_A_114 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | G - 129 |
2ki5_A_114 | 2ki5 | A | AC29-HYROXYETHOXYMETHYLGUANINE | Y - 132 |
Bibliographic annotations |
Clusters included in this Subclass |
CLUSTER: HE.2.22 |