ArchDB - Biological DataBase of Protein Loops

Information on 1gkd_A_395

Loop code: 1gkd_A_395
PDB: 1gkd
Chain: A
Type: HH alpha-alpha

Loop Start: 395 Loop Length: 26
Sec Struct Nt length: 12 Sec Struct Ct length: 10
Structure geometry

d (Å): 15.630400

delta (°): 111.661201

theta (°): 28.906799

rho (°): 312.945312

Sequence:	LFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEGPPLHKDDVNGIRHL
Sec Struct:	HHHHHHHHHHHHTT----S-TTSTTSSS-----S----HHHHHHHHHH

PDB ligands within a cut-off distance of 6 Å in this loop

Ligands	Residue	atSS	atLOOP
STN2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOIC ACID	L - 397	1	0
STN2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOIC ACID	V - 398	1	0
CACALCIUM ION	H - 401	1	0
STN2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOIC ACID	H - 401	1	0
ZNZINC ION	H - 401	1	0
CACALCIUM ION	Q - 402	1	0
STN2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOIC ACID	Q - 402	1	0
ZNZINC ION	Q - 402	1	0
STN2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOIC ACID	H - 405	0	1
ZNZINC ION	H - 405	0	1
CACALCIUM ION	H - 411	0	1
STN2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOIC ACID	H - 411	0	1
ZNZINC ION	H - 411	0	1
STN2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOIC ACID	L - 418	0	1
ZNZINC ION	M - 419	0	1
STN2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOIC ACID	Y - 420	0	1
ZNZINC ION	Y - 420	0	1
BUM2-AMINO-N,3,3-TRIMETHYLBUTANAMIDE	P - 421	0	1
CACALCIUM ION	P - 421	0	1
STN2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOIC ACID	P - 421	0	1
ZNZINC ION	P - 421	0	1
BUM2-AMINO-N,3,3-TRIMETHYLBUTANAMIDE	M - 422	0	1
CACALCIUM ION	M - 422	0	1
STN2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOIC ACID	M - 422	0	1
BUM2-AMINO-N,3,3-TRIMETHYLBUTANAMIDE	Y - 423	0	1
CACALCIUM ION	Y - 423	0	1
STN2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOIC ACID	Y - 423	0	1
BUM2-AMINO-N,3,3-TRIMETHYLBUTANAMIDE	R - 424	0	1
STN2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOIC ACID	R - 424	0	1

PDB Site Annotation

Site	Residue	atSS	atLOOP
ZNAZN BINDING SITE FOR CHAIN A	H - 401	1	0
ZNAZN BINDING SITE FOR CHAIN A	H - 405	0	1
ZNAZN BINDING SITE FOR CHAIN A	H - 411	0	1
BUABUM BINDING SITE FOR CHAIN A	P - 421	0	1
BUABUM BINDING SITE FOR CHAIN A	Y - 423	0	1

Associated ArchDB-EC Subclass to 1gkd_A_395