ArchDB - Biological DataBase of Protein Loops

Information on 1bif_*_124

Loop code: 1bif_*_124
PDB: 1bif
Chain: *
Type: EH beta-alpha

Loop Start: 124 Loop Length: 5
Sec Struct Nt length: 5 Sec Struct Ct length: 14
Structure geometry

d (Å): 14.284600

delta (°): 66.447998

theta (°): 154.754807

rho (°): 346.725098

Sequence:	VAVFDATNTTRERRAMIFNFGEQN
Sec Struct:	EEEEES---SHHHHHHHHHHHHHH

PDB ligands within a cut-off distance of 6 Å in this loop

Ligands	Residue	atSS	atLOOP
ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER	D - 128	0	1
MGMAGNESIUM ION	D - 128	0	1
ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER	A - 129	0	1
MGMAGNESIUM ION	A - 129	0	1
ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER	T - 130	0	1
MGMAGNESIUM ION	T - 130	0	1

PDB Site Annotation

Site	Residue	atSS	atLOOP
S2WALKER-B MOTIF (ZZZZD, Z=HYDROPHOBIC), PART OF THE CLASSICAL MONONUCLEOTIDE BINDING MOTIF. ASP 128 SERVES AS A LIGAND TO THE MG OF MG-ATP.	V - 124	1	0
S2WALKER-B MOTIF (ZZZZD, Z=HYDROPHOBIC), PART OF THE CLASSICAL MONONUCLEOTIDE BINDING MOTIF. ASP 128 SERVES AS A LIGAND TO THE MG OF MG-ATP.	A - 125	1	0
S2WALKER-B MOTIF (ZZZZD, Z=HYDROPHOBIC), PART OF THE CLASSICAL MONONUCLEOTIDE BINDING MOTIF. ASP 128 SERVES AS A LIGAND TO THE MG OF MG-ATP.	V - 126	1	0
S2WALKER-B MOTIF (ZZZZD, Z=HYDROPHOBIC), PART OF THE CLASSICAL MONONUCLEOTIDE BINDING MOTIF. ASP 128 SERVES AS A LIGAND TO THE MG OF MG-ATP.	F - 127	0	1
S2WALKER-B MOTIF (ZZZZD, Z=HYDROPHOBIC), PART OF THE CLASSICAL MONONUCLEOTIDE BINDING MOTIF. ASP 128 SERVES AS A LIGAND TO THE MG OF MG-ATP.	D - 128	0	1

Associated ArchDB40 Subclass to 1bif_*_124

Associated ArchDB95 Subclass to 1bif_*_124