PDB: 1am5 Compound: pepsin Classification: ASPARTYL PROTEASE Entry date in PDB: 1997-12-24 Resolution [Å]: 2.16 R-Factor: 0.208

CHAIN: - SWISS-PROT/TREMBL: P56272    KEYWORD: 3D-structure    Aspartyl protease    Digestion    Hydrolase    EC: 3.4.23.- SCOP: b.50.1.2 All beta proteins    Acid proteases    Acid proteases    Pepsin-like    Pepsin(ogen)    Atlantic cod (Gadus morhua) GO:  aspartic-type endopeptidase activity    pepsin A activity    proteolysis and peptidolysis

Image Source: PDB

Loops in ArchDB95 clusters

1am5_*_221 - EH => SUBCLASS : 1.2.1
1am5_*_119 - EH => SUBCLASS : 13.1.1
1am5_*_190 - AR => SUBCLASS : 1.2.3
1am5_*_190 - AR => SUBCLASS : 1.2.19
1am5_*_210 - AR => SUBCLASS : 4.7.1
1am5_*_2 - HA => SUBCLASS : 3.7.1
1am5_*_274 - HA => SUBCLASS : 3.22.1
1am5_*_308 - HA => SUBCLASS : 4.1.1
1am5_*_13 - HA => SUBCLASS : 4.15.2

Loops in ArchDB-EC clusters

1am5_*_136 - HE => SUBCLASS : 4.2.2

Loops not clustered in ArchDB

1am5_*_286 - AR
1am5_*_238 - AR
1am5_*_245 - AR
1am5_*_286 - AR
1am5_*_25 - AR
1am5_*_96 - AR
1am5_*_163 - AR
1am5_*_190 - AR
1am5_*_202 - AR
1am5_*_210 - AR
1am5_*_238 - AR
1am5_*_202 - AR
1am5_*_163 - AR
1am5_*_96 - AR
1am5_*_245 - AR
1am5_*_25 - AR
1am5_*_265 - EH
1am5_*_38 - EH
1am5_*_298 - EH
1am5_*_180 - HA
1am5_*_196 - HA
1am5_*_180 - HA
1am5_*_258 - HA
1am5_*_274 - HA
1am5_*_282 - HA
1am5_*_150 - HA
1am5_*_308 - HA
1am5_*_196 - HA
1am5_*_150 - HA
1am5_*_79 - HA
1am5_*_258 - HA
1am5_*_282 - HA
1am5_*_65 - HA
1am5_*_2 - HA
1am5_*_13 - HA
1am5_*_65 - HA
1am5_*_79 - HA
1am5_*_48 - HE
1am5_*_228 - HE
1am5_*_271 - HE
1am5_*_303 - HE

1f34 A - percentage of sequence identity: 62
1psa A - percentage of sequence identity: 62
1psa B - percentage of sequence identity: 62
1yx9 A - percentage of sequence identity: 62
2psg - - percentage of sequence identity: 61
3pep - - percentage of sequence identity: 61
5pep - - percentage of sequence identity: 62