PDB: 1bio Compound: complement factor d Classification: SERINE PROTEASE Entry date in PDB: 1999-06-22 Resolution [Å]: 1.50 R-Factor: 0.186

CHAIN: - SWISS-PROT/TREMBL: P00746    KEYWORD: 3D-structure    Complement alternate pathway    Glycoprotein    Hydrolase    Plasma    Serine protease    Signal    Zymogen    EC: 3.4.21.46 SCOP: b.47.1.2 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Eukaryotic proteases    Factor D    Human (Homo sapiens) GO:  chymotrypsin activity    trypsin activity    proteolysis and peptidolysis

Image Source: PDB

Loops in ArchDB40 clusters

1bio_*_198 - HA => SUBCLASS : 2.1.1
1bio_*_39 - HA => SUBCLASS : 2.2.11
1bio_*_30 - HA => SUBCLASS : 2.4.3
1bio_*_30 - HA => SUBCLASS : 2.4.10
1bio_*_226 - EH => SUBCLASS : 0.1.4
1bio_*_156 - EH => SUBCLASS : 1.1.8
1bio_*_20 - AR => SUBCLASS : 8.4.1

Loops in ArchDB95 clusters

1bio_*_226 - EH => SUBCLASS : 0.1.2
1bio_*_156 - EH => SUBCLASS : 1.1.7
1bio_*_20 - AR => SUBCLASS : 8.3.1
1bio_*_104 - AR => SUBCLASS : 24.1.1
1bio_*_104 - AR => SUBCLASS : 26.2.1
1bio_*_198 - HA => SUBCLASS : 2.1.1
1bio_*_30 - HA => SUBCLASS : 2.1.7
1bio_*_39 - HA => SUBCLASS : 2.2.1
1bio_*_30 - HA => SUBCLASS : 2.5.5

Loops in ArchDB-EC clusters

1bio_*_64 - HA => SUBCLASS : 12.2.1

Loops not clustered in ArchDB

1bio_*_51 - AR
1bio_*_51 - AR
1bio_*_180 - AR
1bio_*_180 - AR
1bio_*_104 - AR
1bio_*_20 - AR
1bio_*_81 - HA
1bio_*_135 - HA
1bio_*_198 - HA
1bio_*_208 - HA
1bio_*_64 - HA
1bio_*_39 - HA
1bio_*_30 - HA
1bio_*_208 - HA
1bio_*_135 - HA
1bio_*_81 - HA
1bio_*_165 - HE

1dfp A - percentage of sequence identity: 100
1dfp B - percentage of sequence identity: 100
1dic A - percentage of sequence identity: 100
1dst - - percentage of sequence identity: 98
1dsu A - percentage of sequence identity: 100
1dsu B - percentage of sequence identity: 100
1fdp A - percentage of sequence identity: 100
1fdp C - percentage of sequence identity: 100
1fdp D - percentage of sequence identity: 100
1hfd - - percentage of sequence identity: 100