PDB: 1cd0 Compound: jto, a variable domain from lambda-6 type immunogl Classification: IMMUNE SYSTEM Entry date in PDB: 2000-03-06 Resolution [Å]: 1.90 R-Factor: 0.184

CHAIN: A SWISS-PROT/TREMBL: P06317    KEYWORD: 3D-structure    Immunoglobulin V region    SCOP: b.1.1.1 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    V set domains (antibody variable domain-like)    Immunoglobulin light chain lambda variable domain, VL-lambda    Human (Homo sapiens), cluster 1 GO:   CHAIN: B SWISS-PROT/TREMBL: P06317    KEYWORD: 3D-structure    Immunoglobulin V region    SCOP: b.1.1.1 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    V set domains (antibody variable domain-like)    Immunoglobulin light chain lambda variable domain, VL-lambda    Human (Homo sapiens), cluster 1 GO:

Image Source: PDB

Loops in ArchDB95 clusters

1cd0_A_4 - AR => SUBCLASS : 2.1.2
1cd0_A_4 - AR => SUBCLASS : 2.1.3
1cd0_A_70 - AR => SUBCLASS : 7.1.1
1cd0_A_45 - AR => SUBCLASS : 12.3.1
1cd0_A_84 - HA => SUBCLASS : 2.3.5
1cd0_A_84 - HA => SUBCLASS : 2.3.6
1cd0_A_62 - HA => SUBCLASS : 4.1.1
1cd0_A_34 - HA => SUBCLASS : 5.3.1

Loops not clustered in ArchDB

1cd0_A_9 - AR
1cd0_A_19 - AR
1cd0_A_95 - AR

1a8j H - percentage of sequence identity: 61
1a8j L - percentage of sequence identity: 61
1aqk L - percentage of sequence identity: 61
1cd0 A - percentage of sequence identity: 100
1cd0 B - percentage of sequence identity: 100
1dcl A - percentage of sequence identity: 62
1dcl B - percentage of sequence identity: 62
1jvk A - percentage of sequence identity: 64
1jvk B - percentage of sequence identity: 64
1lgv A - percentage of sequence identity: 64
1lgv B - percentage of sequence identity: 64
1lhz A - percentage of sequence identity: 64
1lhz B - percentage of sequence identity: 64
1mcb A - percentage of sequence identity: 61
1mcb B - percentage of sequence identity: 61
1mcc A - percentage of sequence identity: 61
1mcc B - percentage of sequence identity: 61
1mcd A - percentage of sequence identity: 61
1mcd B - percentage of sequence identity: 61
1mce A - percentage of sequence identity: 61
1mce B - percentage of sequence identity: 61
1mcf A - percentage of sequence identity: 61
1mcf B - percentage of sequence identity: 61
1mch A - percentage of sequence identity: 61
1mch B - percentage of sequence identity: 61
1mci A - percentage of sequence identity: 61
1mci B - percentage of sequence identity: 61
1mcj A - percentage of sequence identity: 61
1mcj B - percentage of sequence identity: 61
1mck A - percentage of sequence identity: 61
1mck B - percentage of sequence identity: 61
1mcl A - percentage of sequence identity: 61
1mcl B - percentage of sequence identity: 61
1mcn A - percentage of sequence identity: 61
1mcn B - percentage of sequence identity: 61
1mco L - percentage of sequence identity: 61
1mcq A - percentage of sequence identity: 61
1mcq B - percentage of sequence identity: 61
1mcr A - percentage of sequence identity: 61
1mcr B - percentage of sequence identity: 61
1mcs A - percentage of sequence identity: 61
1mcs B - percentage of sequence identity: 61
1mcw M - percentage of sequence identity: 61
1nl0 L - percentage of sequence identity: 61
1pew A - percentage of sequence identity: 97
1pew B - percentage of sequence identity: 97
1pw3 A - percentage of sequence identity: 99
1pw3 B - percentage of sequence identity: 99
1rzf L - percentage of sequence identity: 60
1zvo A - percentage of sequence identity: 63
1zvo B - percentage of sequence identity: 63
2a9m L - percentage of sequence identity: 61
2a9m M - percentage of sequence identity: 61
2a9n L - percentage of sequence identity: 61
2a9n M - percentage of sequence identity: 61
2cd0 A - percentage of sequence identity: 83
2cd0 B - percentage of sequence identity: 83
2mcg 1 - percentage of sequence identity: 61
2mcg 2 - percentage of sequence identity: 61
3mcg 1 - percentage of sequence identity: 61
3mcg 2 - percentage of sequence identity: 61