PDB: 1d3y Compound: DNA topoisomerase vi a subunit Classification: ISOMERASE Entry date in PDB: 1999-11-05 Resolution [Å]: 2.00 R-Factor: 0.197

CHAIN: A SWISS-PROT/TREMBL: Q57815    KEYWORD: 3D-structure    Complete proteome    DNA-binding    Isomerase    Magnesium    Metal-binding    Topoisomerase    EC: 5.99.1.3 SCOP: e.12.1.1 Multi-domain proteins (alpha and beta)    DNA topoisomerase IV, alpha subunit    DNA topoisomerase IV, alpha subunit    DNA topoisomerase IV, alpha subunit    DNA topoisomerase IV, alpha subunit    Archaeon Methanococcus jannaschii GO:  ATP binding    DNA binding    DNA topoisomerase (ATP-hydrolyzing) activity    DNA metabolism    DNA topological change    CHAIN: B SWISS-PROT/TREMBL: Q57815    KEYWORD: 3D-structure    Complete proteome    DNA-binding    Isomerase    Magnesium    Metal-binding    Topoisomerase    EC: 5.99.1.3 SCOP: e.12.1.1 Multi-domain proteins (alpha and beta)    DNA topoisomerase IV, alpha subunit    DNA topoisomerase IV, alpha subunit    DNA topoisomerase IV, alpha subunit    DNA topoisomerase IV, alpha subunit    Archaeon Methanococcus jannaschii GO:  ATP binding    DNA binding    DNA topoisomerase (ATP-hydrolyzing) activity    DNA metabolism    DNA topological change

Image Source: PDB

Loops in ArchDB40 clusters

1d3y_A_299 - EH => SUBCLASS : 1.1.4
1d3y_A_192 - EH => SUBCLASS : 2.1.1
1d3y_A_244 - EH => SUBCLASS : 3.8.2
1d3y_A_244 - EH => SUBCLASS : 4.17.2
1d3y_A_147 - AR => SUBCLASS : 2.3.2
1d3y_A_317 - HH => SUBCLASS : 1.1.2
1d3y_A_303 - HH => SUBCLASS : 1.1.26
1d3y_A_199 - HH => SUBCLASS : 1.3.4

Loops in ArchDB95 clusters

1d3y_A_192 - EH => SUBCLASS : 2.1.1
1d3y_A_192 - EH => SUBCLASS : 2.1.2
1d3y_A_299 - EH => SUBCLASS : 2.2.1
1d3y_A_244 - EH => SUBCLASS : 3.8.6
1d3y_A_199 - HH => SUBCLASS : 1.3.5

Loops in ArchDB-EC clusters

1d3y_A_199 - HH => SUBCLASS : 1.3.1

Loops not clustered in ArchDB

1d3y_A_185 - AR
1d3y_A_139 - AR
1d3y_A_161 - AR
1d3y_A_175 - AR
1d3y_A_185 - AR
1d3y_A_139 - AR
1d3y_A_147 - AR
1d3y_A_161 - AR
1d3y_A_175 - AR
1d3y_A_96 - EH
1d3y_A_216 - EH
1d3y_A_282 - EH
1d3y_A_337 - EH
1d3y_A_153 - HA
1d3y_A_153 - HA
1d3y_A_323 - HE
1d3y_A_73 - HE
1d3y_A_116 - HE
1d3y_A_210 - HE
1d3y_A_227 - HE
1d3y_A_258 - HE
1d3y_A_288 - HE
1d3y_A_351 - HH
1d3y_A_98 - HH
1d3y_A_252 - HH

1d3y A - percentage of sequence identity: 100
1d3y B - percentage of sequence identity: 100