PDB: 1d9e Compound: 3-deoxy-d-manno-octulosonate 8-phosphate synthase Classification: LYASE Entry date in PDB: 2000-05-10 Resolution [Å]: 2.40 R-Factor: 0.199

CHAIN: A SWISS-PROT/TREMBL: P17579    KEYWORD: 3D-structure    Complete proteome    Lipopolysaccharide biosynthesis    Transferase    EC: 2.5.1.55 SCOP: c.1.10.4 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Aldolase    Class I DAHP synthetase    3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)    Escherichia coli GO:   CHAIN: B SWISS-PROT/TREMBL: P17579    KEYWORD: 3D-structure    Complete proteome    Lipopolysaccharide biosynthesis    Transferase    EC: 2.5.1.55 SCOP: c.1.10.4 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Aldolase    Class I DAHP synthetase    3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)    Escherichia coli GO:   CHAIN: C SWISS-PROT/TREMBL: P17579    KEYWORD: 3D-structure    Complete proteome    Lipopolysaccharide biosynthesis    Transferase    EC: 2.5.1.55 SCOP: c.1.10.4 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Aldolase    Class I DAHP synthetase    3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)    Escherichia coli GO:   CHAIN: D SWISS-PROT/TREMBL: P17579    KEYWORD: 3D-structure    Complete proteome    Lipopolysaccharide biosynthesis    Transferase    EC: 2.5.1.55 SCOP: c.1.10.4 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Aldolase    Class I DAHP synthetase    3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)    Escherichia coli GO:

Image Source: PDB

Loops in ArchDB95 clusters

1d9e_A_1255 - EH => SUBCLASS : 0.1.9
1d9e_A_1177 - EH => SUBCLASS : 1.1.34
1d9e_A_1255 - EH => SUBCLASS : 1.2.1
1d9e_A_1091 - EH => SUBCLASS : 2.1.5
1d9e_A_1134 - EH => SUBCLASS : 6.2.4
1d9e_A_1163 - AR => SUBCLASS : 2.10.1
1d9e_A_1170 - HA => SUBCLASS : 3.14.1

Loops in ArchDB-EC clusters

1d9e_A_1148 - HE => SUBCLASS : 5.14.1

Loops not clustered in ArchDB

1d9e_A_1163 - AR
1d9e_A_1011 - AR
1d9e_D_4011 - AR
1d9e_D_4163 - AR
1d9e_A_1011 - AR
1d9e_D_4255 - EH
1d9e_D_4196 - EH
1d9e_D_4177 - EH
1d9e_D_4134 - EH
1d9e_D_4111 - EH
1d9e_A_1052 - EH
1d9e_A_1111 - EH
1d9e_A_1196 - EH
1d9e_D_4020 - EH
1d9e_D_4052 - EH
1d9e_D_4092 - EH
1d9e_A_1020 - EH
1d9e_A_1235 - HA
1d9e_A_1006 - HA
1d9e_A_1170 - HA
1d9e_A_1235 - HA
1d9e_D_4006 - HA
1d9e_D_4170 - HA
1d9e_A_1006 - HA
1d9e_D_4235 - HA
1d9e_D_4221 - HE
1d9e_A_1031 - HE
1d9e_A_1073 - HE
1d9e_A_1102 - HE
1d9e_A_1122 - HE
1d9e_A_1183 - HE
1d9e_A_1221 - HE
1d9e_D_4031 - HE
1d9e_D_4099 - HE
1d9e_D_4122 - HE
1d9e_D_4148 - HE
1d9e_D_4183 - HE
1d9e_D_4073 - HE
1d9e_A_1200 - HH

1d9e A - percentage of sequence identity: 100
1d9e B - percentage of sequence identity: 100
1d9e C - percentage of sequence identity: 100
1d9e D - percentage of sequence identity: 100
1g7u A - percentage of sequence identity: 99
1g7v A - percentage of sequence identity: 100
1gg0 A - percentage of sequence identity: 100
1o60 A - percentage of sequence identity: 81
1o60 B - percentage of sequence identity: 81
1o60 C - percentage of sequence identity: 81
1o60 D - percentage of sequence identity: 81
1phq A - percentage of sequence identity: 100
1phw A - percentage of sequence identity: 100
1pl9 A - percentage of sequence identity: 100
1q3n A - percentage of sequence identity: 100
1x6u A - percentage of sequence identity: 100
1x8f A - percentage of sequence identity: 100