PDB: 1dbt Compound: orotidine 5'-phosphate decarboxylase Classification: LYASE Entry date in PDB: 2000-03-06 Resolution [Å]: 2.40 R-Factor: 0.193

CHAIN: A SWISS-PROT/TREMBL: P25971    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyrimidine biosynthesis    EC: 4.1.1.23 SCOP: c.1.2.3 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Ribulose-phoshate binding barrel    Decarboxylase    Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)    Bacillus subtilis GO:  orotidine-5'-phosphate decarboxylase activity    'de novo' pyrimidine base biosynthesis    CHAIN: B SWISS-PROT/TREMBL: P25971    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyrimidine biosynthesis    EC: 4.1.1.23 SCOP: c.1.2.3 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Ribulose-phoshate binding barrel    Decarboxylase    Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)    Bacillus subtilis GO:  orotidine-5'-phosphate decarboxylase activity    'de novo' pyrimidine base biosynthesis    CHAIN: C SWISS-PROT/TREMBL: P25971    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyrimidine biosynthesis    EC: 4.1.1.23 SCOP: c.1.2.3 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Ribulose-phoshate binding barrel    Decarboxylase    Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)    Bacillus subtilis GO:  orotidine-5'-phosphate decarboxylase activity    'de novo' pyrimidine base biosynthesis

Image Source: PDB

Loops in ArchDB40 clusters

1dbt_A_31 - EH => SUBCLASS : 1.1.3
1dbt_A_158 - EH => SUBCLASS : 1.1.10
1dbt_A_7 - EH => SUBCLASS : 4.18.3
1dbt_A_7 - EH => SUBCLASS : 5.18.1
1dbt_A_127 - HH => SUBCLASS : 5.28.1

Loops in ArchDB95 clusters

1dbt_A_31 - EH => SUBCLASS : 1.1.4
1dbt_A_158 - EH => SUBCLASS : 1.1.36
1dbt_A_7 - EH => SUBCLASS : 5.14.2
1dbt_A_215 - HH => SUBCLASS : 3.5.4

Loops in ArchDB-EC clusters

1dbt_A_215 - HH => SUBCLASS : 3.7.1

Loops not clustered in ArchDB

1dbt_A_56 - EH
1dbt_A_84 - EH
1dbt_A_115 - EH
1dbt_A_178 - EH
1dbt_A_210 - EH
1dbt_A_200 - HE
1dbt_A_166 - HE
1dbt_A_140 - HE
1dbt_A_93 - HE
1dbt_A_67 - HE
1dbt_A_44 - HE
1dbt_A_15 - HE
1dbt_A_36 - HH

1dbt A - percentage of sequence identity: 100
1dbt B - percentage of sequence identity: 100
1dbt C - percentage of sequence identity: 100