ArchDB - Biological DataBase of Protein Loops

Information on 1dc5

PDB: 1dc5
Compound: glyceraldehyde-3-phosphate dehydrogenase
Classification: OXIDOREDUCTASE
Entry date in PDB: 2000-08-23
Resolution [Å]: 2.00
R-Factor: 0.206

CHAIN: A

SWISS-PROT/TREMBL: P06977
   KEYWORD: 3D-structure    Complete proteome    Glycolysis    Multigene family    NAD    Oxidoreductase
EC: 1.2.1.12
SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Escherichia coli
SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Escherichia coli
SCOP: d.81.1.1 Alpha and beta proteins (a+b)    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    GAPDH-like    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Escherichia coli
GO:  cytoplasm    cytoplasm    cytoplasm    cytoplasm    glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity    glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity    glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity    glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity    glyceraldehyde-3-phosphate dehydrogenase activity    glyceraldehyde-3-phosphate dehydrogenase activity    glyceraldehyde-3-phosphate dehydrogenase activity    glyceraldehyde-3-phosphate dehydrogenase activity    NAD binding    NAD binding    NAD binding    NAD binding    glucose metabolism    glucose metabolism    glucose metabolism    glucose metabolism    glycolysis    glycolysis    glycolysis    glycolysis

CHAIN: B

Image Source: PDB

Stored Loops of 1dc5

Loops in ArchDB95 clusters

1dc5_A_204 - EH => SUBCLASS : 0.1.46
1dc5_A_238 - EH => SUBCLASS : 5.10.1
1dc5_A_290 - AR => SUBCLASS : 3.2.3
1dc5_A_102 - HE => SUBCLASS : 3.1.4
1dc5_A_252 - HE => SUBCLASS : 6.11.1
1dc5_A_210 - HE => SUBCLASS : 7.10.1
1dc5_A_57 - HA => SUBCLASS : 2.1.1

Loops not clustered in ArchDB

1dc5_A_69 - AR
1dc5_A_167 - AR
1dc5_A_225 - AR
1dc5_A_1 - EH
1dc5_A_304 - EH
1dc5_A_143 - EH
1dc5_A_91 - EH
1dc5_A_25 - EH
1dc5_A_63 - HA
1dc5_A_298 - HA
1dc5_A_271 - HA
1dc5_A_115 - HA
1dc5_A_10 - HE
1dc5_A_37 - HE
1dc5_A_149 - HE

Homologous structures to 1dc5 classified in ArchDB

1crw G - percentage of sequence identity: 65
1crw R - percentage of sequence identity: 65
1dc3 A - percentage of sequence identity: 100
1dc3 B - percentage of sequence identity: 100
1dc4 A - percentage of sequence identity: 100
1dc4 B - percentage of sequence identity: 100
1dc5 A - percentage of sequence identity: 100
1dc5 B - percentage of sequence identity: 100
1dc6 A - percentage of sequence identity: 100
1dc6 B - percentage of sequence identity: 100
1dss G - percentage of sequence identity: 65
1dss R - percentage of sequence identity: 65
1gad O - percentage of sequence identity: 100
1gad P - percentage of sequence identity: 100
1gae O - percentage of sequence identity: 99
1gae P - percentage of sequence identity: 99
1gpd G - percentage of sequence identity: 64
1gpd R - percentage of sequence identity: 64
1ihx A - percentage of sequence identity: 65
1ihx B - percentage of sequence identity: 65
1ihx C - percentage of sequence identity: 65
1ihx D - percentage of sequence identity: 65
1ihy A - percentage of sequence identity: 65
1ihy B - percentage of sequence identity: 65
1ihy C - percentage of sequence identity: 65
1ihy D - percentage of sequence identity: 65
1j0x O - percentage of sequence identity: 67
1j0x P - percentage of sequence identity: 67
1j0x Q - percentage of sequence identity: 67
1j0x R - percentage of sequence identity: 67
1s7c A - percentage of sequence identity: 100
1szj G - percentage of sequence identity: 65
1szj R - percentage of sequence identity: 65
1u8f O - percentage of sequence identity: 66
1u8f P - percentage of sequence identity: 66
1u8f Q - percentage of sequence identity: 66
1u8f R - percentage of sequence identity: 66
1ywg O - percentage of sequence identity: 64
1ywg P - percentage of sequence identity: 64
1ywg Q - percentage of sequence identity: 64
1ywg R - percentage of sequence identity: 64
1znq O - percentage of sequence identity: 66
1znq P - percentage of sequence identity: 66
1znq Q - percentage of sequence identity: 66
1znq R - percentage of sequence identity: 66
2b4r O - percentage of sequence identity: 64
2b4r P - percentage of sequence identity: 64
2b4r Q - percentage of sequence identity: 64
2b4r R - percentage of sequence identity: 64
2b4t O - percentage of sequence identity: 64
2b4t P - percentage of sequence identity: 64
2b4t Q - percentage of sequence identity: 64
2b4t R - percentage of sequence identity: 64
3gpd G - percentage of sequence identity: 65
3gpd R - percentage of sequence identity: 65
4gpd 1 - percentage of sequence identity: 64
4gpd 2 - percentage of sequence identity: 64
4gpd 3 - percentage of sequence identity: 64
4gpd 4 - percentage of sequence identity: 64