PDB: 1dfm Compound: endonuclease bglii Classification: HYDROLASE/DNA Entry date in PDB: 2000-02-21 Resolution [Å]: 1.50 R-Factor: 0.192

CHAIN: A SWISS-PROT/TREMBL: Q45488    KEYWORD: 3D-structure    Endonuclease    Hydrolase    Magnesium    Metal-binding    Nuclease    Restriction system    EC: 3.1.21.4 SCOP: c.52.1.5 Alpha and beta proteins (a/b)    Restriction endonuclease-like    Restriction endonuclease-like    Restriction endonuclease BglII    Restriction endonuclease BglII    Bacillus subtilis GO:   CHAIN: B SWISS-PROT/TREMBL: Q45488    KEYWORD: 3D-structure    Endonuclease    Hydrolase    Magnesium    Metal-binding    Nuclease    Restriction system    EC: 3.1.21.4 SCOP: c.52.1.5 Alpha and beta proteins (a/b)    Restriction endonuclease-like    Restriction endonuclease-like    Restriction endonuclease BglII    Restriction endonuclease BglII    Bacillus subtilis GO:

Image Source: PDB

Loops in ArchDB40 clusters

1dfm_A_50 - HE => SUBCLASS : 1.1.13
1dfm_A_50 - HE => SUBCLASS : 2.1.9
1dfm_A_50 - HE => SUBCLASS : 2.2.11
1dfm_A_82 - HA => SUBCLASS : 2.3.1
1dfm_A_46 - EH => SUBCLASS : 1.1.22
1dfm_A_11 - HH => SUBCLASS : 2.1.7

Loops in ArchDB95 clusters

1dfm_A_46 - EH => SUBCLASS : 1.1.19
1dfm_A_90 - EH => SUBCLASS : 3.4.4
1dfm_A_11 - HH => SUBCLASS : 2.1.8
1dfm_A_50 - HE => SUBCLASS : 2.1.18
1dfm_A_82 - HA => SUBCLASS : 2.3.1

Loops in ArchDB-EC clusters

1dfm_A_11 - HH => SUBCLASS : 2.1.7

Loops not clustered in ArchDB

1dfm_A_165 - AR
1dfm_A_165 - AR
1dfm_A_3 - EH
1dfm_A_126 - EH
1dfm_A_178 - HA
1dfm_A_82 - HA
1dfm_A_67 - HA
1dfm_A_32 - HA
1dfm_A_194 - HA
1dfm_A_178 - HA
1dfm_A_67 - HA
1dfm_A_32 - HA
1dfm_A_194 - HA
1dfm_A_145 - HE
1dfm_A_100 - HE
1dfm_A_17 - HE

1d2i A - percentage of sequence identity: 100
1d2i B - percentage of sequence identity: 100
1dfm A - percentage of sequence identity: 100
1dfm B - percentage of sequence identity: 100
1es8 A - percentage of sequence identity: 100