PDB: 1dvj Compound: orotidine 5'-phosphate decarboxylase Classification: LYASE Entry date in PDB: 2000-04-05 Resolution [Å]: 1.50 R-Factor: 0.174

CHAIN: A SWISS-PROT/TREMBL: O26232    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyrimidine biosynthesis    EC: 4.1.1.23 SCOP: c.1.2.3 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Ribulose-phoshate binding barrel    Decarboxylase    Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)    Archaeon Methanobacterium thermoautotrophicum GO:  orotidine-5'-phosphate decarboxylase activity    'de novo' pyrimidine base biosynthesis    CHAIN: B SWISS-PROT/TREMBL: O26232    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyrimidine biosynthesis    EC: 4.1.1.23 SCOP: c.1.2.3 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Ribulose-phoshate binding barrel    Decarboxylase    Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)    Archaeon Methanobacterium thermoautotrophicum GO:  orotidine-5'-phosphate decarboxylase activity    'de novo' pyrimidine base biosynthesis    CHAIN: C SWISS-PROT/TREMBL: O26232    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyrimidine biosynthesis    EC: 4.1.1.23 SCOP: c.1.2.3 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Ribulose-phoshate binding barrel    Decarboxylase    Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)    Archaeon Methanobacterium thermoautotrophicum GO:  orotidine-5'-phosphate decarboxylase activity    'de novo' pyrimidine base biosynthesis    CHAIN: D SWISS-PROT/TREMBL: O26232    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyrimidine biosynthesis    EC: 4.1.1.23 SCOP: c.1.2.3 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Ribulose-phoshate binding barrel    Decarboxylase    Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)    Archaeon Methanobacterium thermoautotrophicum GO:  orotidine-5'-phosphate decarboxylase activity    'de novo' pyrimidine base biosynthesis

Image Source: PDB

Loops in ArchDB95 clusters

1dvj_A_40 - EH => SUBCLASS : 0.1.1
1dvj_A_198 - EH => SUBCLASS : 0.1.7
1dvj_A_15 - EH => SUBCLASS : 4.6.2
1dvj_A_45 - HH => SUBCLASS : 1.4.1
1dvj_A_203 - HH => SUBCLASS : 3.5.4

Loops in ArchDB-EC clusters

1dvj_A_203 - HH => SUBCLASS : 3.7.1

Loops not clustered in ArchDB

1dvj_A_66 - EH
1dvj_A_94 - EH
1dvj_A_119 - EH
1dvj_A_153 - EH
1dvj_A_176 - EH
1dvj_A_189 - HE
1dvj_A_161 - HE
1dvj_A_135 - HE
1dvj_A_103 - HE
1dvj_A_77 - HE
1dvj_A_54 - HE
1dvj_A_24 - HE
1dvj_A_211 - HH

1dv7 A - percentage of sequence identity: 99
1dvj A - percentage of sequence identity: 100
1dvj B - percentage of sequence identity: 100
1dvj C - percentage of sequence identity: 100
1dvj D - percentage of sequence identity: 100
1kly A - percentage of sequence identity: 99
1klz A - percentage of sequence identity: 99
1km0 A - percentage of sequence identity: 99
1km0 B - percentage of sequence identity: 99
1km0 C - percentage of sequence identity: 99
1km0 D - percentage of sequence identity: 99
1km1 A - percentage of sequence identity: 99
1km1 B - percentage of sequence identity: 99
1km2 A - percentage of sequence identity: 99
1km3 A - percentage of sequence identity: 99
1km4 A - percentage of sequence identity: 99
1km5 A - percentage of sequence identity: 99
1km6 A - percentage of sequence identity: 99
1lol A - percentage of sequence identity: 100
1lol B - percentage of sequence identity: 100
1loq A - percentage of sequence identity: 99
1lor A - percentage of sequence identity: 99
1los A - percentage of sequence identity: 97
1los B - percentage of sequence identity: 97
1los C - percentage of sequence identity: 97
1los D - percentage of sequence identity: 97
1lp6 A - percentage of sequence identity: 100
1lp6 B - percentage of sequence identity: 100
1x1z A - percentage of sequence identity: 99
1x1z B - percentage of sequence identity: 99