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Information on 1dzf
PDB: 1dzf
Compound: DNA-directed RNA polymerases i, ii, and iii 27 kd
Classification: RNA POLYMERASE
Entry date in PDB: 2000-06-09
Resolution [Å]: 1.90
R-Factor: 0.217


CHAIN: A
SWISS-PROT/TREMBL: P20434
   KEYWORD: 3D-structure    DNA-directed RNA polymerase    Nuclear protein    Transcription    Transferase   
EC: 2.7.7.6
SCOP: c.52.3.1 Alpha and beta proteins (a/b)    Restriction endonuclease-like    Eukaryotic RPB5 N-terminal domain    Eukaryotic RPB5 N-terminal domain    Eukaryotic RPB5 N-terminal domain    Baker's yeast (Saccharomyces cerevisiae)
SCOP: d.78.1.1 Alpha and beta proteins (a+b)    RPB5-like RNA polymerase subunit    RPB5-like RNA polymerase subunit    RPB5    Eukaryotic RPB5 C-terminal domain    Baker's yeast (Saccharomyces cerevisiae)
GO:  DNA binding    DNA-directed RNA polymerase activity    transcription   
1dzf Image
Image Source: PDB

Stored Loops of 1dzf

Loops in ArchDB40 clusters

1dzf_A_90 - HE => SUBCLASS : 3.1.1
1dzf_A_87 - EH => SUBCLASS : 1.1.3
1dzf_A_152 - EH => SUBCLASS : 1.1.4
1dzf_A_152 - EH => SUBCLASS : 1.1.12
1dzf_A_177 - EH => SUBCLASS : 3.1.2
1dzf_A_177 - EH => SUBCLASS : 3.1.5
1dzf_A_60 - EH => SUBCLASS : 3.3.2
1dzf_A_78 - AR => SUBCLASS : 3.9.1

Loops in ArchDB95 clusters

1dzf_A_87 - EH => SUBCLASS : 1.1.4
1dzf_A_152 - EH => SUBCLASS : 2.2.1
1dzf_A_60 - EH => SUBCLASS : 3.1.1
1dzf_A_60 - EH => SUBCLASS : 3.8.1
1dzf_A_177 - EH => SUBCLASS : 4.1.8
1dzf_A_78 - AR => SUBCLASS : 3.4.1
1dzf_A_90 - HE => SUBCLASS : 3.1.1
1dzf_A_183 - HE => SUBCLASS : 6.4.1

Loops in ArchDB-EC clusters

1dzf_A_183 - HE => SUBCLASS : 6.5.1

Loops not clustered in ArchDB

1dzf_A_107 - AR
1dzf_A_78 - AR
1dzf_A_107 - AR
1dzf_A_115 - EH
1dzf_A_131 - EH
1dzf_A_195 - HA
1dzf_A_195 - HA
1dzf_A_158 - HE
1dzf_A_137 - HE
1dzf_A_118 - HE
1dzf_A_66 - HE
1dzf_A_39 - HE
1dzf_A_32 - HH
1dzf_A_7 - HH

Homologous structures to 1dzf classified in ArchDB

1i3q E - percentage of sequence identity: 100
1i50 E - percentage of sequence identity: 100
1i6h E - percentage of sequence identity: 100
1k83 E - percentage of sequence identity: 100
1nik E - percentage of sequence identity: 100
1nt9 E - percentage of sequence identity: 100
1pqv E - percentage of sequence identity: 100
1r5u E - percentage of sequence identity: 100
1r9s E - percentage of sequence identity: 100
1r9t E - percentage of sequence identity: 100
1sfo E - percentage of sequence identity: 100
1twa E - percentage of sequence identity: 100
1twc E - percentage of sequence identity: 100
1twf E - percentage of sequence identity: 100
1twg E - percentage of sequence identity: 100
1twh E - percentage of sequence identity: 100
1wcm E - percentage of sequence identity: 100
1y1v E - percentage of sequence identity: 100
1y1w E - percentage of sequence identity: 100
1y1y E - percentage of sequence identity: 100
1y77 E - percentage of sequence identity: 100
2b63 E - percentage of sequence identity: 100