PDB: 1g9m Compound: envelope glycoprotein gp120 Classification: VIRUS/VIRAL PROTEIN Entry date in PDB: 2000-12-27 Resolution [Å]: 2.20 R-Factor: 0.268

CHAIN: C SWISS-PROT/TREMBL: P01730    KEYWORD: 3D-structure    Glycoprotein    Immune response    Immunoglobulin domain    Lipoprotein    Palmitate    Polymorphism    Repeat    Signal    T-cell    Transmembrane    SCOP: b.1.1.1 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    V set domains (antibody variable domain-like)    CD4 V-set domains    Human (Homo sapiens) SCOP: b.1.1.3 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C2 set domains    CD4 C2-set domains    Human (Homo sapiens) GO:  integral to membrane    membrane    cell adhesion    immune response    CHAIN: G SWISS-PROT/TREMBL: P04578    KEYWORD: 3D-structure    AIDS    Coat protein    Glycoprotein    Polyprotein    Signal    Transmembrane    SCOP: d.172.1.1 Alpha and beta proteins (a+b)    gp120 core    gp120 core    gp120 core    gp120 core    Human immunodeficiency virus type 1 GO:  viral envelope    structural molecule activity

Image Source: PDB

Loops in ArchDB40 clusters

1g9m_G_369 - HE => SUBCLASS : 0.1.17
1g9m_G_369 - HE => SUBCLASS : 2.6.2
1g9m_G_99 - HE => SUBCLASS : 4.20.1
1g9m_G_374 - HA => SUBCLASS : 2.1.1
1g9m_G_420 - AR => SUBCLASS : 1.1.1

Loops in ArchDB95 clusters

1g9m_G_369 - HE => SUBCLASS : 0.1.50
1g9m_G_475 - HE => SUBCLASS : 1.3.9
1g9m_G_369 - HE => SUBCLASS : 2.6.1
1g9m_G_335 - HE => SUBCLASS : 4.1.10
1g9m_G_99 - HE => SUBCLASS : 4.8.5
1g9m_G_374 - HA => SUBCLASS : 2.1.1

Loops not clustered in ArchDB

1g9m_G_393 - AR
1g9m_G_432 - AR
1g9m_G_381 - AR
1g9m_G_413 - AR
1g9m_G_260 - AR
1g9m_G_237 - AR
1g9m_G_199 - AR
1g9m_G_84 - EH
1g9m_G_359 - EH
1g9m_G_330 - EH
1g9m_G_466 - EH
1g9m_G_423 - HA
1g9m_G_444 - HA
1g9m_G_284 - HA
1g9m_G_271 - HA
1g9m_G_223 - HA
1g9m_G_120 - HA

1a4k H - percentage of sequence identity: 71
1ad0 A - percentage of sequence identity: 81
1b0w A - percentage of sequence identity: 64
1bm3 L - percentage of sequence identity: 60
1bww A - percentage of sequence identity: 61
1bz7 A - percentage of sequence identity: 74
1c5c H - percentage of sequence identity: 69
1cdy - - percentage of sequence identity: 99
1ce1 H - percentage of sequence identity: 65
1clo L - percentage of sequence identity: 60
1cz8 H - percentage of sequence identity: 66
1d5i L - percentage of sequence identity: 76
1eeq A - percentage of sequence identity: 67
1ek3 A - percentage of sequence identity: 63
1fgv L - percentage of sequence identity: 63
1fl5 B - percentage of sequence identity: 67
1g9n G - percentage of sequence identity: 85
1gaf L - percentage of sequence identity: 77
1gc1 G - percentage of sequence identity: 99
1h8n A - percentage of sequence identity: 60
1i7z A - percentage of sequence identity: 80
1igm L - percentage of sequence identity: 64
1iqd A - percentage of sequence identity: 88
1iqw L - percentage of sequence identity: 60
1ivl A - percentage of sequence identity: 60
1jhl L - percentage of sequence identity: 63
1jpt H - percentage of sequence identity: 69
1kcu L - percentage of sequence identity: 60
1l7i L - percentage of sequence identity: 83
1lk3 L - percentage of sequence identity: 64
1n0x H - percentage of sequence identity: 73
1n7m H - percentage of sequence identity: 79
1op3 H - percentage of sequence identity: 64
1p2c A - percentage of sequence identity: 60
1r3j A - percentage of sequence identity: 61
1rhh A - percentage of sequence identity: 88
1rih L - percentage of sequence identity: 60
1rz7 H - percentage of sequence identity: 77
1rz8 A - percentage of sequence identity: 97
1rzf H - percentage of sequence identity: 75
1rzg A - percentage of sequence identity: 78
1rzj G - percentage of sequence identity: 100
1rzk G - percentage of sequence identity: 85
1sbs L - percentage of sequence identity: 60
1ucb H - percentage of sequence identity: 66
1vge H - percentage of sequence identity: 75
1wtl A - percentage of sequence identity: 60
1yyl G - percentage of sequence identity: 85
1yyl P - percentage of sequence identity: 85
1yym G - percentage of sequence identity: 85
1yym P - percentage of sequence identity: 85
2b4c G - percentage of sequence identity: 81
2f5b H - percentage of sequence identity: 60
2imn - - percentage of sequence identity: 62
8fab B - percentage of sequence identity: 67