PDB: 1gte Compound: dihydropyrimidine dehydrogenase Classification: OXIDOREDUCTASE Entry date in PDB: 2002-04-11 Resolution [Å]: 1.65 R-Factor: 0.181

CHAIN: A SWISS-PROT/TREMBL: Q28943    KEYWORD: 3D-structure    4Fe-4S    FAD    Flavoprotein    FMN    Iron-sulfur    NADP    Oxidoreductase    EC: 1.3.1.2 SCOP: a.1.2.2 All alpha proteins    Globin-like    alpha-helical ferredoxin    Dihydropyrimidine dehydrogenase, N-terminal domain    Dihydropyrimidine dehydrogenase, N-terminal domain    Pig (Sus scrofa) SCOP: c.1.4.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    FMN-linked oxidoreductases    FMN-linked oxidoreductases    Dihydropyrimidine dehydrogenase, domain 4    Pig (Sus scrofa) SCOP: c.3.1.1 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    C-terminal domain of adrenodoxin reductase-like    Dihydropyrimidine dehydrogenase, domain 3    Pig (Sus scrofa) SCOP: c.4.1.1 Alpha and beta proteins (a/b)    Nucleotide-binding domain    Nucleotide-binding domain    N-terminal domain of adrenodoxin reductase-like    Dihydropyrimidine dehydrogenase, domain 2    Pig (Sus scrofa) SCOP: c.4.1.1 Alpha and beta proteins (a/b)    Nucleotide-binding domain    Nucleotide-binding domain    N-terminal domain of adrenodoxin reductase-like    Dihydropyrimidine dehydrogenase, domain 2    Pig (Sus scrofa) SCOP: d.58.1.5 Alpha and beta proteins (a+b)    Ferredoxin-like    4Fe-4S ferredoxins    Ferredoxin domains from multidomain proteins    Dihydropyrimidine dehydrogenase, C-terminal domain    Pig (Sus scrofa) GO:  cytoplasm    membrane    dihydroorotate dehydrogenase activity    dihydroorotate oxidase activity    disulfide oxidoreductase activity    electron transporter activity    iron ion binding    oxidoreductase activity    'de novo' pyrimidine base biosynthesis    electron transport    CHAIN: B SWISS-PROT/TREMBL: Q28943    KEYWORD: 3D-structure    4Fe-4S    FAD    Flavoprotein    FMN    Iron-sulfur    NADP    Oxidoreductase    EC: 1.3.1.2 SCOP: a.1.2.2 All alpha proteins    Globin-like    alpha-helical ferredoxin    Dihydropyrimidine dehydrogenase, N-terminal domain    Dihydropyrimidine dehydrogenase, N-terminal domain    Pig (Sus scrofa) SCOP: c.1.4.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    FMN-linked oxidoreductases    FMN-linked oxidoreductases    Dihydropyrimidine dehydrogenase, domain 4    Pig (Sus scrofa) SCOP: c.3.1.1 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    C-terminal domain of adrenodoxin reductase-like    Dihydropyrimidine dehydrogenase, domain 3    Pig (Sus scrofa) SCOP: c.4.1.1 Alpha and beta proteins (a/b)    Nucleotide-binding domain    Nucleotide-binding domain    N-terminal domain of adrenodoxin reductase-like    Dihydropyrimidine dehydrogenase, domain 2    Pig (Sus scrofa) SCOP: c.4.1.1 Alpha and beta proteins (a/b)    Nucleotide-binding domain    Nucleotide-binding domain    N-terminal domain of adrenodoxin reductase-like    Dihydropyrimidine dehydrogenase, domain 2    Pig (Sus scrofa) SCOP: d.58.1.5 Alpha and beta proteins (a+b)    Ferredoxin-like    4Fe-4S ferredoxins    Ferredoxin domains from multidomain proteins    Dihydropyrimidine dehydrogenase, C-terminal domain    Pig (Sus scrofa) GO:  cytoplasm    membrane    dihydroorotate dehydrogenase activity    dihydroorotate oxidase activity    disulfide oxidoreductase activity    electron transporter activity    iron ion binding    oxidoreductase activity    'de novo' pyrimidine base biosynthesis    electron transport    CHAIN: C SWISS-PROT/TREMBL: Q28943    KEYWORD: 3D-structure    4Fe-4S    FAD    Flavoprotein    FMN    Iron-sulfur    NADP    Oxidoreductase    EC: 1.3.1.2 SCOP: a.1.2.2 All alpha proteins    Globin-like    alpha-helical ferredoxin    Dihydropyrimidine dehydrogenase, N-terminal domain    Dihydropyrimidine dehydrogenase, N-terminal domain    Pig (Sus scrofa) SCOP: c.1.4.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    FMN-linked oxidoreductases    FMN-linked oxidoreductases    Dihydropyrimidine dehydrogenase, domain 4    Pig (Sus scrofa) SCOP: c.3.1.1 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    C-terminal domain of adrenodoxin reductase-like    Dihydropyrimidine dehydrogenase, domain 3    Pig (Sus scrofa) SCOP: c.4.1.1 Alpha and beta proteins (a/b)    Nucleotide-binding domain    Nucleotide-binding domain    N-terminal domain of adrenodoxin reductase-like    Dihydropyrimidine dehydrogenase, domain 2    Pig (Sus scrofa) SCOP: c.4.1.1 Alpha and beta proteins (a/b)    Nucleotide-binding domain    Nucleotide-binding domain    N-terminal domain of adrenodoxin reductase-like    Dihydropyrimidine dehydrogenase, domain 2    Pig (Sus scrofa) SCOP: d.58.1.5 Alpha and beta proteins (a+b)    Ferredoxin-like    4Fe-4S ferredoxins    Ferredoxin domains from multidomain proteins    Dihydropyrimidine dehydrogenase, C-terminal domain    Pig (Sus scrofa) GO:  cytoplasm    membrane    dihydroorotate dehydrogenase activity    dihydroorotate oxidase activity    disulfide oxidoreductase activity    electron transporter activity    iron ion binding    oxidoreductase activity    'de novo' pyrimidine base biosynthesis    electron transport    CHAIN: D SWISS-PROT/TREMBL: Q28943    KEYWORD: 3D-structure    4Fe-4S    FAD    Flavoprotein    FMN    Iron-sulfur    NADP    Oxidoreductase    EC: 1.3.1.2 SCOP: a.1.2.2 All alpha proteins    Globin-like    alpha-helical ferredoxin    Dihydropyrimidine dehydrogenase, N-terminal domain    Dihydropyrimidine dehydrogenase, N-terminal domain    Pig (Sus scrofa) SCOP: c.1.4.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    FMN-linked oxidoreductases    FMN-linked oxidoreductases    Dihydropyrimidine dehydrogenase, domain 4    Pig (Sus scrofa) SCOP: c.3.1.1 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    C-terminal domain of adrenodoxin reductase-like    Dihydropyrimidine dehydrogenase, domain 3    Pig (Sus scrofa) SCOP: c.4.1.1 Alpha and beta proteins (a/b)    Nucleotide-binding domain    Nucleotide-binding domain    N-terminal domain of adrenodoxin reductase-like    Dihydropyrimidine dehydrogenase, domain 2    Pig (Sus scrofa) SCOP: c.4.1.1 Alpha and beta proteins (a/b)    Nucleotide-binding domain    Nucleotide-binding domain    N-terminal domain of adrenodoxin reductase-like    Dihydropyrimidine dehydrogenase, domain 2    Pig (Sus scrofa) SCOP: d.58.1.5 Alpha and beta proteins (a+b)    Ferredoxin-like    4Fe-4S ferredoxins    Ferredoxin domains from multidomain proteins    Dihydropyrimidine dehydrogenase, C-terminal domain    Pig (Sus scrofa) GO:  cytoplasm    membrane    dihydroorotate dehydrogenase activity    dihydroorotate oxidase activity    disulfide oxidoreductase activity    electron transporter activity    iron ion binding    oxidoreductase activity    'de novo' pyrimidine base biosynthesis    electron transport

Image Source: PDB

Loops in ArchDB-EC clusters

1gte_A_86 - HH => SUBCLASS : 6.26.1

Loops not clustered in ArchDB

1gte_A_278 - AR
1gte_A_731 - AR
1gte_A_570 - AR
1gte_A_540 - AR
1gte_A_433 - AR
1gte_A_419 - AR
1gte_A_386 - AR
1gte_A_287 - AR
1gte_A_980 - EH
1gte_A_944 - EH
1gte_A_863 - EH
1gte_A_812 - EH
1gte_A_790 - EH
1gte_A_763 - EH
1gte_A_706 - EH
1gte_A_214 - EH
1gte_A_254 - EH
1gte_A_303 - EH
1gte_A_334 - EH
1gte_A_358 - EH
1gte_A_440 - EH
1gte_A_190 - EH
1gte_A_476 - EH
1gte_A_664 - EH
1gte_A_636 - EH
1gte_A_546 - EH
1gte_A_607 - EH
1gte_A_738 - HA
1gte_A_391 - HA
1gte_A_402 - HA
1gte_A_971 - HA
1gte_A_859 - HA
1gte_A_590 - HA
1gte_A_535 - HA
1gte_A_771 - HE
1gte_A_647 - HE
1gte_A_618 - HE
1gte_A_557 - HE
1gte_A_489 - HE
1gte_A_445 - HE
1gte_A_688 - HE
1gte_A_374 - HE
1gte_A_342 - HE
1gte_A_306 - HE
1gte_A_268 - HE
1gte_A_238 - HE
1gte_A_197 - HE
1gte_A_717 - HE
1gte_A_152 - HE
1gte_A_799 - HE
1gte_A_826 - HE
1gte_A_921 - HE
1gte_A_958 - HE
1gte_A_991 - HE
1gte_A_10 - HH
1gte_A_31 - HH
1gte_A_69 - HH
1gte_A_97 - HH
1gte_A_109 - HH
1gte_A_123 - HH
1gte_A_226 - HH
1gte_A_817 - HH
1gte_A_880 - HH

1gt8 A - percentage of sequence identity: 100
1gt8 B - percentage of sequence identity: 100
1gt8 C - percentage of sequence identity: 100
1gt8 D - percentage of sequence identity: 100
1gte A - percentage of sequence identity: 100
1gte B - percentage of sequence identity: 100
1gte C - percentage of sequence identity: 100
1gte D - percentage of sequence identity: 100
1gth A - percentage of sequence identity: 100
1gth B - percentage of sequence identity: 100
1gth C - percentage of sequence identity: 100
1gth D - percentage of sequence identity: 100
1h7w A - percentage of sequence identity: 100
1h7w B - percentage of sequence identity: 100
1h7w C - percentage of sequence identity: 100
1h7w D - percentage of sequence identity: 100
1h7x A - percentage of sequence identity: 99
1h7x B - percentage of sequence identity: 99
1h7x C - percentage of sequence identity: 99
1h7x D - percentage of sequence identity: 99