PDB: 1gvf Compound: tagatose-bisphosphate aldolase agay Classification: LYASE Entry date in PDB: 2002-06-18 Resolution [Å]: 1.45 R-Factor: 0.127

CHAIN: A SWISS-PROT/TREMBL: P42908    KEYWORD: 3D-structure    Complete proteome    Lyase    Zinc    EC: 4.1.2.- SCOP: c.1.10.2 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Aldolase    Class II FBP aldolase    Tagatose-1,6-bisphosphate aldolase    Escherichia coli GO:  aldehyde-lyase activity    aldehyde-lyase activity    aldehyde-lyase activity    fructose-bisphosphate aldolase activity    fructose-bisphosphate aldolase activity    fructose-bisphosphate aldolase activity    zinc ion binding    zinc ion binding    zinc ion binding    glycolysis    glycolysis    glycolysis    lactose catabolism via tagatose-6-phosphate    lactose catabolism via tagatose-6-phosphate    lactose catabolism via tagatose-6-phosphate    CHAIN: B SWISS-PROT/TREMBL: P42908    KEYWORD: 3D-structure    Complete proteome    Lyase    Zinc    EC: 4.1.2.- SCOP: c.1.10.2 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Aldolase    Class II FBP aldolase    Tagatose-1,6-bisphosphate aldolase    Escherichia coli GO:  aldehyde-lyase activity    aldehyde-lyase activity    aldehyde-lyase activity    fructose-bisphosphate aldolase activity    fructose-bisphosphate aldolase activity    fructose-bisphosphate aldolase activity    zinc ion binding    zinc ion binding    zinc ion binding    glycolysis    glycolysis    glycolysis    lactose catabolism via tagatose-6-phosphate    lactose catabolism via tagatose-6-phosphate    lactose catabolism via tagatose-6-phosphate

Image Source: PDB

Loops in ArchDB40 clusters

1gvf_A_46 - EH => SUBCLASS : 0.1.13
1gvf_A_226 - EH => SUBCLASS : 0.1.23
1gvf_A_20 - EH => SUBCLASS : 2.1.2
1gvf_A_78 - EH => SUBCLASS : 2.1.4
1gvf_A_78 - EH => SUBCLASS : 2.1.13
1gvf_A_53 - HH => SUBCLASS : 2.3.9

Loops in ArchDB95 clusters

1gvf_A_78 - EH => SUBCLASS : 2.1.2
1gvf_A_20 - EH => SUBCLASS : 2.1.3
1gvf_A_100 - EH => SUBCLASS : 6.15.1
1gvf_A_53 - HH => SUBCLASS : 2.3.9

Loops in ArchDB-EC clusters

1gvf_A_53 - HH => SUBCLASS : 2.3.11

Loops not clustered in ArchDB

1gvf_A_130 - EH
1gvf_A_171 - EH
1gvf_A_205 - EH
1gvf_A_215 - HE
1gvf_A_191 - HE
1gvf_A_157 - HE
1gvf_A_110 - HE
1gvf_A_87 - HE
1gvf_A_59 - HE
1gvf_A_28 - HE
1gvf_A_7 - HE
1gvf_A_233 - HH

1gvf A - percentage of sequence identity: 100
1gvf B - percentage of sequence identity: 100