PDB: 1gvn Compound: epsilon Classification: POSTSEGREGATIONAL KILLING SYSTEM Entry date in PDB: 2003-01-29 Resolution [Å]: 1.95 R-Factor: 0.200

CHAIN: A SWISS-PROT/TREMBL: Q57231    KEYWORD: 3D-structure    Plasmid    SCOP: a.8.2.1 All alpha proteins    immunoglobulin/albumin-binding domain-like    Plasmid maintenance system epsilon/zeta, antidote epsilon subunit    Plasmid maintenance system epsilon/zeta, antidote epsilon subunit    Plasmid maintenance system epsilon/zeta, antidote epsilon subunit    Streptococcus pyogenes GO:   CHAIN: B SWISS-PROT/TREMBL: Q54944    KEYWORD: 3D-structure    ATP-binding    Plasmid    Toxin    SCOP: c.37.1.21 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Plasmid maintenance system epsilon/zeta, toxin zeta subunit    Plasmid maintenance system epsilon/zeta, toxin zeta subunit    Streptococcus pyogenes GO:  ATP binding    cell killing    CHAIN: C SWISS-PROT/TREMBL: Q57231    KEYWORD: 3D-structure    Plasmid    SCOP: a.8.2.1 All alpha proteins    immunoglobulin/albumin-binding domain-like    Plasmid maintenance system epsilon/zeta, antidote epsilon subunit    Plasmid maintenance system epsilon/zeta, antidote epsilon subunit    Plasmid maintenance system epsilon/zeta, antidote epsilon subunit    Streptococcus pyogenes GO:   CHAIN: D SWISS-PROT/TREMBL: Q54944    KEYWORD: 3D-structure    ATP-binding    Plasmid    Toxin    SCOP: c.37.1.21 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Plasmid maintenance system epsilon/zeta, toxin zeta subunit    Plasmid maintenance system epsilon/zeta, toxin zeta subunit    Streptococcus pyogenes GO:  ATP binding    cell killing

Image Source: PDB

Loops in ArchDB40 clusters

1gvn_B_201 - HA => SUBCLASS : 3.1.1
1gvn_B_62 - EH => SUBCLASS : 0.1.21
1gvn_B_62 - EH => SUBCLASS : 0.1.55
1gvn_B_62 - EH => SUBCLASS : 1.1.25
1gvn_B_138 - EH => SUBCLASS : 3.5.1
1gvn_B_113 - EH => SUBCLASS : 4.43.1
1gvn_B_34 - EH => SUBCLASS : 6.1.1
1gvn_B_222 - HH => SUBCLASS : 4.9.3

Loops in ArchDB95 clusters

1gvn_B_62 - EH => SUBCLASS : 0.1.31
1gvn_B_62 - EH => SUBCLASS : 0.1.41
1gvn_B_62 - EH => SUBCLASS : 1.1.45
1gvn_B_138 - EH => SUBCLASS : 3.7.1
1gvn_B_138 - EH => SUBCLASS : 3.7.5
1gvn_B_113 - EH => SUBCLASS : 4.56.1
1gvn_B_34 - EH => SUBCLASS : 6.1.1
1gvn_B_222 - HH => SUBCLASS : 4.7.4
1gvn_B_123 - HE => SUBCLASS : 1.1.1
1gvn_B_88 - HE => SUBCLASS : 2.1.1
1gvn_B_175 - HE => SUBCLASS : 2.3.1
1gvn_B_47 - HE => SUBCLASS : 3.39.1
1gvn_B_175 - HE => SUBCLASS : 4.4.1
1gvn_B_201 - HA => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1gvn_B_210 - EH
1gvn_B_9 - HE
1gvn_A_5 - HH
1gvn_A_42 - HH
1gvn_B_67 - HH
1gvn_B_76 - HH
1gvn_B_148 - HH
1gvn_B_236 - HH

1gvn B - percentage of sequence identity: 100
1gvn D - percentage of sequence identity: 100
null nu - percentage of sequence identity: 0