PDB: 1h8t Compound: echovirus 11 coat protein vp1 Classification: ECHOVIRUS COAT PROTEIN Entry date in PDB: 2002-07-11 Resolution [Å]: 2.90 R-Factor: 0.246

CHAIN: A SWISS-PROT/TREMBL: P29813    KEYWORD: 3D-structure    Coat protein    Core protein    Hydrolase    Lipoprotein    Myristate    Polyprotein    RNA-directed RNA polymerase    Thiol protease    Transferase    EC: 2.7.7.48 SCOP: b.121.4.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Positive stranded ssRNA viruses    Picornaviridae-like VP (VP1, VP2, VP3 and VP4)    Human enterovirus B coat proteins    Human echovirus 11 GO:  viral capsid    ATP binding    cysteine-type endopeptidase activity    helicase activity    nucleoside-triphosphatase activity    nucleotide binding    peptidase activity    picornain 3C activity    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    structural molecule activity    proteolysis and peptidolysis    transcription    viral genome replication    viral life cycle    CHAIN: B SWISS-PROT/TREMBL: P29813    KEYWORD: 3D-structure    Coat protein    Core protein    Hydrolase    Lipoprotein    Myristate    Polyprotein    RNA-directed RNA polymerase    Thiol protease    Transferase    EC: 2.7.7.48 SCOP: b.121.4.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Positive stranded ssRNA viruses    Picornaviridae-like VP (VP1, VP2, VP3 and VP4)    Human enterovirus B coat proteins    Human echovirus 11 GO:  viral capsid    ATP binding    cysteine-type endopeptidase activity    helicase activity    nucleoside-triphosphatase activity    nucleotide binding    peptidase activity    picornain 3C activity    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    structural molecule activity    proteolysis and peptidolysis    transcription    viral genome replication    viral life cycle    CHAIN: C SWISS-PROT/TREMBL: P29813    KEYWORD: 3D-structure    Coat protein    Core protein    Hydrolase    Lipoprotein    Myristate    Polyprotein    RNA-directed RNA polymerase    Thiol protease    Transferase    EC: 2.7.7.48 SCOP: b.121.4.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Positive stranded ssRNA viruses    Picornaviridae-like VP (VP1, VP2, VP3 and VP4)    Human enterovirus B coat proteins    Human echovirus 11 GO:  viral capsid    ATP binding    cysteine-type endopeptidase activity    helicase activity    nucleoside-triphosphatase activity    nucleotide binding    peptidase activity    picornain 3C activity    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    structural molecule activity    proteolysis and peptidolysis    transcription    viral genome replication    viral life cycle    CHAIN: D SWISS-PROT/TREMBL: P29813    KEYWORD: 3D-structure    Coat protein    Core protein    Hydrolase    Lipoprotein    Myristate    Polyprotein    RNA-directed RNA polymerase    Thiol protease    Transferase    EC: 2.7.7.48 SCOP: b.121.4.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Positive stranded ssRNA viruses    Picornaviridae-like VP (VP1, VP2, VP3 and VP4)    Human enterovirus B coat proteins    Human echovirus 11 GO:  viral capsid    ATP binding    cysteine-type endopeptidase activity    helicase activity    nucleoside-triphosphatase activity    nucleotide binding    peptidase activity    picornain 3C activity    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    structural molecule activity    proteolysis and peptidolysis    transcription    viral genome replication    viral life cycle

Image Source: PDB

Loops in ArchDB-EC clusters

1h8t_C_2043 - HE => SUBCLASS : 2.5.4

Loops not clustered in ArchDB

1h8t_B_1098 - AR
1h8t_B_1187 - AR
1h8t_B_1153 - AR
1h8t_B_1219 - AR
1h8t_B_1069 - AR
1h8t_B_1064 - AR
1h8t_B_1032 - AR
1h8t_B_1021 - AR
1h8t_C_2051 - AR
1h8t_C_2070 - AR
1h8t_C_2107 - AR
1h8t_C_2114 - AR
1h8t_C_2152 - AR
1h8t_C_2163 - AR
1h8t_C_2177 - AR
1h8t_C_2189 - AR
1h8t_C_2207 - AR
1h8t_B_1197 - AR
1h8t_B_1078 - EH
1h8t_B_1119 - EH
1h8t_C_2081 - EH
1h8t_C_2127 - EH
1h8t_D_3004 - HA
1h8t_B_1014 - HA
1h8t_C_2099 - HE
1h8t_B_1090 - HE
1h8t_C_2145 - HE
1h8t_B_1143 - HE
1h8t_C_2093 - HH

1cov 3 - percentage of sequence identity: 75
1d4m 3 - percentage of sequence identity: 79
1ev1 3 - percentage of sequence identity: 71
1jew 3 - percentage of sequence identity: 75
1m11 3 - percentage of sequence identity: 79
1mqt C - percentage of sequence identity: 75
1oop C - percentage of sequence identity: 75
1upn C - percentage of sequence identity: 100
1xyr 6 - percentage of sequence identity: 66
1z7s 3 - percentage of sequence identity: 62
1z7z 3 - percentage of sequence identity: 62
2c8i C - percentage of sequence identity: 100
null nu - percentage of sequence identity: 0