PDB: 1inl Compound: spermidine synthase Classification: TRANSFERASE Entry date in PDB: 2001-11-21 Resolution [Å]: 1.50 R-Factor: 0.199

CHAIN: A SWISS-PROT/TREMBL: Q9WZC2    KEYWORD: 3D-structure    Complete proteome    Polyamine biosynthesis    Spermidine biosynthesis    Transferase    EC: 2.5.1.16 SCOP: c.66.1.17 Alpha and beta proteins (a/b)    S-adenosyl-L-methionine-dependent methyltransferases    S-adenosyl-L-methionine-dependent methyltransferases    Spermidine synthase    Spermidine synthase    Thermotoga maritima GO:  catalytic activity    S-adenosylmethionine-dependent methyltransferase activity    CHAIN: B SWISS-PROT/TREMBL: Q9WZC2    KEYWORD: 3D-structure    Complete proteome    Polyamine biosynthesis    Spermidine biosynthesis    Transferase    EC: 2.5.1.16 SCOP: c.66.1.17 Alpha and beta proteins (a/b)    S-adenosyl-L-methionine-dependent methyltransferases    S-adenosyl-L-methionine-dependent methyltransferases    Spermidine synthase    Spermidine synthase    Thermotoga maritima GO:  catalytic activity    S-adenosylmethionine-dependent methyltransferase activity    CHAIN: C SWISS-PROT/TREMBL: Q9WZC2    KEYWORD: 3D-structure    Complete proteome    Polyamine biosynthesis    Spermidine biosynthesis    Transferase    EC: 2.5.1.16 SCOP: c.66.1.17 Alpha and beta proteins (a/b)    S-adenosyl-L-methionine-dependent methyltransferases    S-adenosyl-L-methionine-dependent methyltransferases    Spermidine synthase    Spermidine synthase    Thermotoga maritima GO:  catalytic activity    S-adenosylmethionine-dependent methyltransferase activity    CHAIN: D SWISS-PROT/TREMBL: Q9WZC2    KEYWORD: 3D-structure    Complete proteome    Polyamine biosynthesis    Spermidine biosynthesis    Transferase    EC: 2.5.1.16 SCOP: c.66.1.17 Alpha and beta proteins (a/b)    S-adenosyl-L-methionine-dependent methyltransferases    S-adenosyl-L-methionine-dependent methyltransferases    Spermidine synthase    Spermidine synthase    Thermotoga maritima GO:  catalytic activity    S-adenosylmethionine-dependent methyltransferase activity

Image Source: PDB

Loops in ArchDB40 clusters

1inl_A_185 - HE => SUBCLASS : 0.1.16
1inl_A_212 - HE => SUBCLASS : 2.5.1
1inl_A_103 - HE => SUBCLASS : 5.8.2
1inl_A_73 - HE => SUBCLASS : 5.23.1
1inl_A_36 - HA => SUBCLASS : 2.2.1
1inl_A_47 - HA => SUBCLASS : 3.2.1
1inl_A_228 - HA => SUBCLASS : 7.9.1
1inl_A_146 - EH => SUBCLASS : 1.1.24
1inl_A_116 - EH => SUBCLASS : 2.1.1
1inl_A_146 - EH => SUBCLASS : 3.5.7
1inl_A_93 - EH => SUBCLASS : 4.57.1
1inl_A_29 - AR => SUBCLASS : 1.1.3
1inl_A_276 - HH => SUBCLASS : 3.16.1

Loops in ArchDB95 clusters

1inl_A_65 - EH => SUBCLASS : 1.1.12
1inl_A_146 - EH => SUBCLASS : 1.1.33
1inl_A_116 - EH => SUBCLASS : 2.1.1
1inl_A_116 - EH => SUBCLASS : 2.1.2
1inl_A_146 - EH => SUBCLASS : 3.7.4
1inl_A_93 - EH => SUBCLASS : 4.78.1
1inl_A_29 - AR => SUBCLASS : 1.2.1
1inl_A_29 - AR => SUBCLASS : 1.2.26
1inl_A_276 - HH => SUBCLASS : 3.18.1
1inl_A_185 - HE => SUBCLASS : 0.1.24
1inl_A_212 - HE => SUBCLASS : 2.2.6
1inl_A_212 - HE => SUBCLASS : 2.2.8
1inl_A_103 - HE => SUBCLASS : 5.2.4
1inl_A_73 - HE => SUBCLASS : 5.38.1
1inl_A_36 - HA => SUBCLASS : 2.2.1
1inl_A_36 - HA => SUBCLASS : 3.1.1
1inl_A_47 - HA => SUBCLASS : 3.3.1
1inl_A_228 - HA => SUBCLASS : 7.16.1

Loops in ArchDB-EC clusters

1inl_A_73 - HE => SUBCLASS : 5.32.1

Loops not clustered in ArchDB

1inl_A_29 - AR
1inl_A_164 - EH
1inl_A_194 - EH
1inl_A_243 - EH
1inl_A_57 - HA
1inl_A_47 - HA
1inl_A_36 - HA
1inl_A_18 - HA
1inl_A_57 - HA
1inl_A_18 - HA
1inl_A_228 - HA
1inl_A_153 - HE
1inl_A_135 - HE
1inl_A_4 - HE
1inl_A_261 - HH
1inl_A_124 - HH

1inl A - percentage of sequence identity: 100
1inl B - percentage of sequence identity: 100
1inl C - percentage of sequence identity: 100
1inl D - percentage of sequence identity: 100
1jq3 A - percentage of sequence identity: 100
1jq3 B - percentage of sequence identity: 100
1jq3 C - percentage of sequence identity: 100
1jq3 D - percentage of sequence identity: 100