PDB: 1j09 Compound: glutamyl-trna synthetase Classification: LIGASE Entry date in PDB: 2003-02-25 Resolution [Å]: 1.80 R-Factor: 0.199

CHAIN: A SWISS-PROT/TREMBL: P27000    KEYWORD: 3D-structure    Aminoacyl-tRNA synthetase    ATP-binding    Ligase    Protein biosynthesis    EC: 6.1.1.17 SCOP: a.97.1.1 All alpha proteins    An anticodon-binding domain of class I aminoacyl-tRNA synthetases    An anticodon-binding domain of class I aminoacyl-tRNA synthetases    C-terminal domain of glutamyl-tRNA synthetase (GluRS)    C-terminal domain of glutamyl-tRNA synthetase (GluRS)    Thermus thermophilus SCOP: c.26.1.1 Alpha and beta proteins (a/b)    Adenine nucleotide alpha hydrolase-like    Nucleotidylyl transferase    Class I aminoacyl-tRNA synthetases (RS), catalytic domain    Glutamyl-tRNA synthetase (GluRS)    Thermus thermophilus GO:  cytoplasm    ATP binding    glutamate-tRNA ligase activity    tRNA ligase activity    glutamyl-tRNA aminoacylation    tRNA aminoacylation for protein translation

Image Source: PDB

Loops in ArchDB40 clusters

1j09_A_16 - HE => SUBCLASS : 1.1.1
1j09_A_86 - HE => SUBCLASS : 2.4.1
1j09_A_187 - HE => SUBCLASS : 3.1.1
1j09_A_131 - HE => SUBCLASS : 3.2.1
1j09_A_213 - HE => SUBCLASS : 5.27.1
1j09_A_155 - HA => SUBCLASS : 3.2.1
1j09_A_202 - EH => SUBCLASS : 1.3.6
1j09_A_177 - EH => SUBCLASS : 7.13.1
1j09_A_447 - HH => SUBCLASS : 1.4.3
1j09_A_447 - HH => SUBCLASS : 1.4.8
1j09_A_409 - HH => SUBCLASS : 3.1.1
1j09_A_253 - HH => SUBCLASS : 3.2.1
1j09_A_253 - HH => SUBCLASS : 3.3.1
1j09_A_324 - HH => SUBCLASS : 6.9.1

Loops in ArchDB95 clusters

1j09_A_202 - EH => SUBCLASS : 1.2.9
1j09_A_102 - EH => SUBCLASS : 3.4.2
1j09_A_102 - EH => SUBCLASS : 3.4.11
1j09_A_177 - EH => SUBCLASS : 7.25.1
1j09_A_447 - HH => SUBCLASS : 1.4.1
1j09_A_409 - HH => SUBCLASS : 3.1.1
1j09_A_253 - HH => SUBCLASS : 3.1.3
1j09_A_253 - HH => SUBCLASS : 3.2.1
1j09_A_253 - HH => SUBCLASS : 3.2.3
1j09_A_345 - HH => SUBCLASS : 3.6.4
1j09_A_324 - HH => SUBCLASS : 6.14.1
1j09_A_16 - HE => SUBCLASS : 1.1.1
1j09_A_86 - HE => SUBCLASS : 2.4.1
1j09_A_187 - HE => SUBCLASS : 3.1.1
1j09_A_213 - HE => SUBCLASS : 3.2.3
1j09_A_131 - HE => SUBCLASS : 3.5.1
1j09_A_155 - HA => SUBCLASS : 3.3.1

Loops in ArchDB-EC clusters

1j09_A_253 - HH => SUBCLASS : 3.3.1

Loops not clustered in ArchDB

1j09_A_164 - AR
1j09_A_145 - AR
1j09_A_164 - AR
1j09_A_145 - AR
1j09_A_3 - EH
1j09_A_35 - EH
1j09_A_229 - EH
1j09_A_155 - HA
1j09_A_263 - HH
1j09_A_52 - HH
1j09_A_427 - HH
1j09_A_381 - HH
1j09_A_109 - HH
1j09_A_307 - HH
1j09_A_286 - HH
1j09_A_364 - HH

1g59 A - percentage of sequence identity: 99
1g59 C - percentage of sequence identity: 99
1gln - - percentage of sequence identity: 99
1n75 A - percentage of sequence identity: 100
1n77 A - percentage of sequence identity: 100
1n77 B - percentage of sequence identity: 100
1n78 A - percentage of sequence identity: 100
1n78 B - percentage of sequence identity: 100