PDB: 1j1q Compound: antiviral protein s Classification: HYDROLASE Entry date in PDB: 2004-02-03 Resolution [Å]: 1.80 R-Factor: 0.173

CHAIN: A SWISS-PROT/TREMBL: P23339    KEYWORD: Antiviral    Hydrolase    Plant defense    Protein synthesis inhibitor    Toxin    EC: 3.2.2.22 SCOP: d.165.1.1 Alpha and beta proteins (a+b)    Ribosome inactivating proteins (RIP)    Ribosome inactivating proteins (RIP)    Plant cytotoxins    Antiviral protein S    Pokeweed (Phytolacca americana) GO:  rRNA N-glycosylase activity    negative regulation of protein biosynthesis

Image Source: PDB

Loops in ArchDB95 clusters

1j1q_A_4 - EH => SUBCLASS : 5.61.1
1j1q_A_111 - EH => SUBCLASS : 7.33.1
1j1q_A_174 - HH => SUBCLASS : 1.2.1
1j1q_A_180 - HH => SUBCLASS : 6.38.1
1j1q_A_13 - HE => SUBCLASS : 5.25.1
1j1q_A_73 - HA => SUBCLASS : 2.1.1
1j1q_A_33 - HA => SUBCLASS : 2.1.1
1j1q_A_221 - HA => SUBCLASS : 3.1.1
1j1q_A_49 - HA => SUBCLASS : 3.1.1
1j1q_A_61 - HA => SUBCLASS : 4.1.2
1j1q_A_221 - HA => SUBCLASS : 5.1.1
1j1q_A_221 - HA => SUBCLASS : 5.1.4
1j1q_A_61 - HA => SUBCLASS : 5.5.1

Loops not clustered in ArchDB

1j1q_A_37 - AR
1j1q_A_83 - EH
1j1q_A_235 - EH
1j1q_A_95 - HE
1j1q_A_207 - HE
1j1q_A_122 - HH
1j1q_A_141 - HH
1j1q_A_159 - HH
1j1q_A_198 - HH

1d6a B - percentage of sequence identity: 76
1j1r A - percentage of sequence identity: 100
1j1s A - percentage of sequence identity: 100
1paf A - percentage of sequence identity: 76
1paf B - percentage of sequence identity: 76
1pag A - percentage of sequence identity: 76
1pag B - percentage of sequence identity: 76
1qcg A - percentage of sequence identity: 76
1qcg B - percentage of sequence identity: 76
1qci B - percentage of sequence identity: 76
1qcj A - percentage of sequence identity: 76
1qcj B - percentage of sequence identity: 76