PDB: 1j1u Compound: tyrosyl-trna synthetase Classification: LIGASE/RNA Entry date in PDB: 2003-06-03 Resolution [Å]: 1.95 R-Factor: 0.188

CHAIN: A SWISS-PROT/TREMBL: Q57834    KEYWORD: 3D-structure    Aminoacyl-tRNA synthetase    ATP-binding    Complete proteome    Ligase    Protein biosynthesis    EC: 6.1.1.1 SCOP: c.26.1.1 Alpha and beta proteins (a/b)    Adenine nucleotide alpha hydrolase-like    Nucleotidylyl transferase    Class I aminoacyl-tRNA synthetases (RS), catalytic domain    Tyrosyl-tRNA synthetase (TyrRS)    Archaeon Methanococcus jannaschii GO:  ATP binding    tRNA ligase activity    tyrosine-tRNA ligase activity    tRNA aminoacylation for protein translation    tyrosyl-tRNA aminoacylation

Image Source: PDB

Loops in ArchDB40 clusters

1j1u_A_265 - EH => SUBCLASS : 0.1.1
1j1u_A_60 - EH => SUBCLASS : 1.1.22
1j1u_A_60 - EH => SUBCLASS : 1.1.25
1j1u_A_166 - EH => SUBCLASS : 1.3.1
1j1u_A_13 - EH => SUBCLASS : 1.6.1
1j1u_A_265 - EH => SUBCLASS : 2.1.1
1j1u_A_112 - HH => SUBCLASS : 2.3.10
1j1u_A_270 - HH => SUBCLASS : 4.1.4
1j1u_A_270 - HH => SUBCLASS : 4.1.9

Loops in ArchDB95 clusters

1j1u_A_60 - EH => SUBCLASS : 1.1.19
1j1u_A_166 - EH => SUBCLASS : 1.2.3
1j1u_A_13 - EH => SUBCLASS : 1.5.1
1j1u_A_265 - EH => SUBCLASS : 2.1.1
1j1u_A_265 - EH => SUBCLASS : 2.1.4
1j1u_A_112 - HH => SUBCLASS : 2.3.22
1j1u_A_112 - HH => SUBCLASS : 2.4.2
1j1u_A_270 - HH => SUBCLASS : 4.1.1
1j1u_A_43 - HE => SUBCLASS : 1.2.1
1j1u_A_79 - HE => SUBCLASS : 1.2.9
1j1u_A_17 - HE => SUBCLASS : 2.2.1
1j1u_A_17 - HE => SUBCLASS : 2.2.6
1j1u_A_147 - HE => SUBCLASS : 3.1.1
1j1u_A_79 - HE => SUBCLASS : 3.2.10
1j1u_A_174 - HE => SUBCLASS : 4.3.10
1j1u_A_3 - HE => SUBCLASS : 4.12.1
1j1u_A_174 - HE => SUBCLASS : 4.15.2
1j1u_A_240 - HE => SUBCLASS : 4.67.1

Loops in ArchDB-EC clusters

1j1u_A_270 - HH => SUBCLASS : 4.2.1

Loops not clustered in ArchDB

1j1u_A_29 - EH
1j1u_A_101 - EH
1j1u_A_189 - EH
1j1u_A_253 - HA
1j1u_A_253 - HA
1j1u_A_68 - HH
1j1u_A_127 - HH
1j1u_A_219 - HH

1u7d A - percentage of sequence identity: 100
1u7d B - percentage of sequence identity: 100
1u7x A - percentage of sequence identity: 98
1u7x B - percentage of sequence identity: 98