PDB: 1j9m Compound: dd-transpeptidase Classification: HYDROLASE Entry date in PDB: 2001-06-13 Resolution [Å]: 1.65 R-Factor: 0.218

CHAIN: A SWISS-PROT/TREMBL: P39042    KEYWORD: 3D-structure    Carboxypeptidase    Cell wall    Hydrolase    Peptidoglycan synthesis    Signal    EC: 3.4.16.4 SCOP: e.3.1.1 Multi-domain proteins (alpha and beta)    beta-lactamase/transpeptidase-like    beta-lactamase/transpeptidase-like    beta-Lactamase/D-ala carboxypeptidase    D-ala carboxypeptidase/transpeptidase    Streptomyces sp., K15 GO:  serine carboxypeptidase activity    proteolysis and peptidolysis

Image Source: PDB

Loops in ArchDB40 clusters

1j9m_A_221 - HA => SUBCLASS : 2.1.1
1j9m_A_182 - HA => SUBCLASS : 3.1.1
1j9m_A_10 - HA => SUBCLASS : 4.1.2
1j9m_A_56 - EH => SUBCLASS : 2.2.4
1j9m_A_56 - EH => SUBCLASS : 2.2.7
1j9m_A_31 - EH => SUBCLASS : 2.7.1
1j9m_A_21 - AR => SUBCLASS : 5.28.1
1j9m_A_154 - HH => SUBCLASS : 1.1.6
1j9m_A_85 - HH => SUBCLASS : 2.2.1
1j9m_A_85 - HH => SUBCLASS : 2.2.11

Loops in ArchDB95 clusters

1j9m_A_56 - EH => SUBCLASS : 2.2.1
1j9m_A_56 - EH => SUBCLASS : 2.2.5
1j9m_A_56 - EH => SUBCLASS : 2.4.15
1j9m_A_31 - EH => SUBCLASS : 2.7.1
1j9m_A_196 - EH => SUBCLASS : 3.3.5
1j9m_A_196 - EH => SUBCLASS : 3.10.4
1j9m_A_21 - AR => SUBCLASS : 5.10.1
1j9m_A_154 - HH => SUBCLASS : 1.1.7
1j9m_A_85 - HH => SUBCLASS : 2.2.1
1j9m_A_85 - HH => SUBCLASS : 2.2.11
1j9m_A_221 - HA => SUBCLASS : 2.1.1
1j9m_A_182 - HA => SUBCLASS : 3.1.1
1j9m_A_10 - HA => SUBCLASS : 4.1.2

Loops not clustered in ArchDB

1j9m_A_178 - AR
1j9m_A_190 - AR
1j9m_A_82 - EH
1j9m_A_151 - EH
1j9m_A_233 - EH
1j9m_A_209 - HA
1j9m_A_202 - HE
1j9m_A_168 - HE
1j9m_A_114 - HE
1j9m_A_61 - HE
1j9m_A_38 - HE
1j9m_A_98 - HH

1es2 A - percentage of sequence identity: 99
1es3 A - percentage of sequence identity: 99
1es4 A - percentage of sequence identity: 99
1esi A - percentage of sequence identity: 99
1skf - - percentage of sequence identity: 99