ArchDB - Biological DataBase of Protein Loops

Information on 1j9q

PDB: 1j9q
Compound: copper-containing nitrite reductase
Classification: OXIDOREDUCTASE
Entry date in PDB: 2001-06-06
Resolution [Å]: 1.65
R-Factor: 0.179

CHAIN: A

SWISS-PROT/TREMBL: P38501
   KEYWORD: 3D-structure    Copper    FAD    Flavoprotein    Metal-binding    Nitrate assimilation    Oxidoreductase    Periplasmic    Pyrrolidone carboxylic acid    Repeat    Signal
EC: 1.7.2.1
SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Alcaligenes faecalis, strain s-6
SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Alcaligenes faecalis, strain s-6
GO:  copper ion binding    nitrite reductase (NO-forming) activity    oxidoreductase activity    nitrogen compound metabolism

CHAIN: B

CHAIN: C

Image Source: PDB

Stored Loops of 1j9q

Loops in ArchDB95 clusters

1j9q_A_130 - EH => SUBCLASS : 5.78.1
1j9q_A_233 - AR => SUBCLASS : 1.1.2
1j9q_A_73 - AR => SUBCLASS : 1.1.2
1j9q_A_254 - AR => SUBCLASS : 1.1.9
1j9q_A_233 - AR => SUBCLASS : 3.3.2
1j9q_A_287 - AR => SUBCLASS : 4.3.1
1j9q_A_80 - AR => SUBCLASS : 7.22.1
1j9q_A_58 - AR => SUBCLASS : 8.30.1
1j9q_A_275 - AR => SUBCLASS : 8.38.1
1j9q_A_217 - AR => SUBCLASS : 12.10.1
1j9q_A_98 - AR => SUBCLASS : 18.3.1
1j9q_A_6 - HE => SUBCLASS : 1.3.13
1j9q_A_142 - HE => SUBCLASS : 2.1.22
1j9q_A_142 - HE => SUBCLASS : 2.5.4
1j9q_A_308 - HE => SUBCLASS : 2.5.8
1j9q_A_203 - HE => SUBCLASS : 4.21.1
1j9q_A_162 - HA => SUBCLASS : 3.1.1
1j9q_A_38 - HA => SUBCLASS : 6.40.1
1j9q_A_261 - HA => SUBCLASS : 8.11.1

Loops in ArchDB-EC clusters

1j9q_A_203 - HE => SUBCLASS : 4.33.1

Loops not clustered in ArchDB

1j9q_A_287 - AR
1j9q_A_98 - AR
1j9q_A_118 - AR
1j9q_A_151 - AR
1j9q_A_169 - AR
1j9q_A_217 - AR
1j9q_A_233 - AR
1j9q_A_240 - AR
1j9q_A_254 - AR
1j9q_A_275 - AR
1j9q_A_80 - AR
1j9q_A_73 - AR
1j9q_A_118 - AR
1j9q_A_151 - AR
1j9q_A_169 - AR
1j9q_A_240 - AR
1j9q_A_58 - AR
1j9q_A_299 - EH
1j9q_A_174 - EH
1j9q_A_162 - HA
1j9q_A_14 - HA
1j9q_A_38 - HA
1j9q_A_14 - HA
1j9q_A_261 - HA

Homologous structures to 1j9q classified in ArchDB

1aq8 A - percentage of sequence identity: 99
1aq8 B - percentage of sequence identity: 99
1aq8 C - percentage of sequence identity: 99
1as6 A - percentage of sequence identity: 99
1as6 B - percentage of sequence identity: 99
1as6 C - percentage of sequence identity: 99
1as7 A - percentage of sequence identity: 99
1as7 B - percentage of sequence identity: 99
1as7 C - percentage of sequence identity: 99
1as8 A - percentage of sequence identity: 99
1as8 B - percentage of sequence identity: 99
1as8 C - percentage of sequence identity: 99
1bq5 - - percentage of sequence identity: 66
1et5 A - percentage of sequence identity: 100
1et7 A - percentage of sequence identity: 99
1et8 A - percentage of sequence identity: 99
1gs6 X - percentage of sequence identity: 66
1gs7 A - percentage of sequence identity: 66
1gs8 A - percentage of sequence identity: 67
1hau A - percentage of sequence identity: 67
1haw A - percentage of sequence identity: 67
1j9q A - percentage of sequence identity: 100
1j9q B - percentage of sequence identity: 100
1j9q C - percentage of sequence identity: 100
1j9r A - percentage of sequence identity: 100
1j9r B - percentage of sequence identity: 100
1j9r C - percentage of sequence identity: 100
1j9s A - percentage of sequence identity: 99
1j9s B - percentage of sequence identity: 99
1j9s C - percentage of sequence identity: 99
1j9t A - percentage of sequence identity: 99
1j9t B - percentage of sequence identity: 99
1j9t C - percentage of sequence identity: 99
1kcb A - percentage of sequence identity: 81
1l9o A - percentage of sequence identity: 99
1l9o B - percentage of sequence identity: 99
1l9o C - percentage of sequence identity: 99
1l9p A - percentage of sequence identity: 99
1l9p B - percentage of sequence identity: 99
1l9p C - percentage of sequence identity: 99
1l9q A - percentage of sequence identity: 99
1l9q B - percentage of sequence identity: 99
1l9q C - percentage of sequence identity: 99
1l9r A - percentage of sequence identity: 99
1l9r B - percentage of sequence identity: 99
1l9r C - percentage of sequence identity: 99
1l9s A - percentage of sequence identity: 99
1l9s B - percentage of sequence identity: 99
1l9s C - percentage of sequence identity: 99
1l9t A - percentage of sequence identity: 99
1l9t B - percentage of sequence identity: 99
1l9t C - percentage of sequence identity: 99
1mzy A - percentage of sequence identity: 63
1mzz A - percentage of sequence identity: 63
1mzz B - percentage of sequence identity: 63
1mzz C - percentage of sequence identity: 63
1n70 A - percentage of sequence identity: 63
1ndr A - percentage of sequence identity: 68
1ndr B - percentage of sequence identity: 68
1ndr C - percentage of sequence identity: 68
1nds A - percentage of sequence identity: 68
1nds B - percentage of sequence identity: 68
1nds C - percentage of sequence identity: 68
1ndt A - percentage of sequence identity: 65
1nia A - percentage of sequence identity: 81
1nia B - percentage of sequence identity: 81
1nia C - percentage of sequence identity: 81
1nib A - percentage of sequence identity: 81
1nib B - percentage of sequence identity: 81
1nib C - percentage of sequence identity: 81
1nic - - percentage of sequence identity: 81
1nid - - percentage of sequence identity: 81
1nie - - percentage of sequence identity: 81
1nif - - percentage of sequence identity: 81
1npj A - percentage of sequence identity: 99
1npj B - percentage of sequence identity: 99
1npj C - percentage of sequence identity: 99
1npn A - percentage of sequence identity: 99
1npn B - percentage of sequence identity: 99
1npn C - percentage of sequence identity: 99
1ntd - - percentage of sequence identity: 99
1oe1 A - percentage of sequence identity: 67
1oe2 A - percentage of sequence identity: 67
1oe3 A - percentage of sequence identity: 67
1rzp A - percentage of sequence identity: 81
1rzp B - percentage of sequence identity: 81
1rzp C - percentage of sequence identity: 81
1rzq A - percentage of sequence identity: 81
1rzq B - percentage of sequence identity: 81
1rzq C - percentage of sequence identity: 81
1sjm A - percentage of sequence identity: 99
1sjm B - percentage of sequence identity: 99
1sjm C - percentage of sequence identity: 99
1snr A - percentage of sequence identity: 99
1snr B - percentage of sequence identity: 99
1snr C - percentage of sequence identity: 99
1wa0 X - percentage of sequence identity: 66
1wa1 X - percentage of sequence identity: 66
1wa2 X - percentage of sequence identity: 66
1wae A - percentage of sequence identity: 66
1zv2 A - percentage of sequence identity: 64
2a3t A - percentage of sequence identity: 64
2afn A - percentage of sequence identity: 99
2afn B - percentage of sequence identity: 99
2afn C - percentage of sequence identity: 99
2avf A - percentage of sequence identity: 81
2avf B - percentage of sequence identity: 81
2avf C - percentage of sequence identity: 81
2avf D - percentage of sequence identity: 81
2avf E - percentage of sequence identity: 81
2avf F - percentage of sequence identity: 81
2bw4 A - percentage of sequence identity: 81
2bw5 A - percentage of sequence identity: 81
2bwd A - percentage of sequence identity: 81
2bwi A - percentage of sequence identity: 81
2nrd - - percentage of sequence identity: 81