PDB: 1jmj Compound: heparin cofactor ii Classification: BLOOD CLOTTING Entry date in PDB: 2002-08-30 Resolution [Å]: 2.35 R-Factor: 0.208

CHAIN: A SWISS-PROT/TREMBL: P05546    KEYWORD: 3D-structure    Blood coagulation    Chemotaxis    Disease mutation    Glycoprotein    Heparin-binding    Plasma    Polymorphism    Repeat    Serine protease inhibitor    Serpin    Signal    Sulfation    Thrombophilia    SCOP: e.1.1.1 Multi-domain proteins (alpha and beta)    Serpins    Serpins    Serpins    Heparin cofactor II (Hc-II, leuserpin 2)    Human (Homo sapiens) GO:  serine-type endopeptidase inhibitor activity    CHAIN: B SWISS-PROT/TREMBL: P05546    KEYWORD: 3D-structure    Blood coagulation    Chemotaxis    Disease mutation    Glycoprotein    Heparin-binding    Plasma    Polymorphism    Repeat    Serine protease inhibitor    Serpin    Signal    Sulfation    Thrombophilia    SCOP: e.1.1.1 Multi-domain proteins (alpha and beta)    Serpins    Serpins    Serpins    Heparin cofactor II (Hc-II, leuserpin 2)    Human (Homo sapiens) GO:  serine-type endopeptidase inhibitor activity

Image Source: PDB

Loops in ArchDB40 clusters

1jmj_A_323 - HA => SUBCLASS : 2.1.1
1jmj_A_456 - HA => SUBCLASS : 4.1.2
1jmj_A_378 - EH => SUBCLASS : 0.1.77
1jmj_A_334 - EH => SUBCLASS : 2.1.1
1jmj_A_229 - EH => SUBCLASS : 3.1.2
1jmj_A_229 - EH => SUBCLASS : 4.5.1
1jmj_A_197 - EH => SUBCLASS : 6.18.1
1jmj_A_448 - AR => SUBCLASS : 3.2.1
1jmj_A_152 - HH => SUBCLASS : 1.3.1
1jmj_A_136 - HH => SUBCLASS : 2.5.2

Loops in ArchDB95 clusters

1jmj_A_378 - EH => SUBCLASS : 0.1.74
1jmj_A_334 - EH => SUBCLASS : 2.1.1
1jmj_A_334 - EH => SUBCLASS : 2.1.5
1jmj_A_229 - EH => SUBCLASS : 3.2.1
1jmj_A_229 - EH => SUBCLASS : 4.1.2
1jmj_A_197 - EH => SUBCLASS : 6.25.1
1jmj_A_268 - AR => SUBCLASS : 10.4.1
1jmj_A_152 - HH => SUBCLASS : 1.3.1
1jmj_A_152 - HH => SUBCLASS : 1.3.10
1jmj_A_136 - HH => SUBCLASS : 2.8.1
1jmj_A_323 - HA => SUBCLASS : 2.1.1
1jmj_A_323 - HA => SUBCLASS : 3.2.1
1jmj_A_456 - HA => SUBCLASS : 4.1.2

Loops not clustered in ArchDB

1jmj_A_367 - AR
1jmj_A_417 - AR
1jmj_A_430 - AR
1jmj_A_132 - EH
1jmj_A_290 - HA
1jmj_A_300 - HA
1jmj_A_387 - HE
1jmj_A_356 - HE
1jmj_A_237 - HE
1jmj_A_215 - HE
1jmj_A_176 - HE
1jmj_A_103 - HE
1jmj_A_63 - HH
1jmj_A_164 - HH
1jmj_A_346 - HH

1jmj A - percentage of sequence identity: 100
1jmj B - percentage of sequence identity: 100
1jmo A - percentage of sequence identity: 100