PDB: 1knz Compound: nonstructural RNA-binding protein 34 Classification: VIRUS/VIRAL PROTEIN/RNA Entry date in PDB: 2002-01-17 Resolution [Å]: 2.45 R-Factor: 0.228

CHAIN: A SWISS-PROT/TREMBL: P03536    KEYWORD: 3D-structure    Nonstructural protein    RNA-binding    SCOP: e.34.1.1 Multi-domain proteins (alpha and beta)    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    Simian 11 rotavirus GO:  RNA binding    CHAIN: B SWISS-PROT/TREMBL: P03536    KEYWORD: 3D-structure    Nonstructural protein    RNA-binding    SCOP: e.34.1.1 Multi-domain proteins (alpha and beta)    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    Simian 11 rotavirus GO:  RNA binding    CHAIN: C SWISS-PROT/TREMBL: P03536    KEYWORD: 3D-structure    Nonstructural protein    RNA-binding    SCOP: e.34.1.1 Multi-domain proteins (alpha and beta)    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    Simian 11 rotavirus GO:  RNA binding    CHAIN: D SWISS-PROT/TREMBL: P03536    KEYWORD: 3D-structure    Nonstructural protein    RNA-binding    SCOP: e.34.1.1 Multi-domain proteins (alpha and beta)    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    Simian 11 rotavirus GO:  RNA binding    CHAIN: I SWISS-PROT/TREMBL: P03536    KEYWORD: 3D-structure    Nonstructural protein    RNA-binding    SCOP: e.34.1.1 Multi-domain proteins (alpha and beta)    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    Simian 11 rotavirus GO:  RNA binding    CHAIN: J SWISS-PROT/TREMBL: P03536    KEYWORD: 3D-structure    Nonstructural protein    RNA-binding    SCOP: e.34.1.1 Multi-domain proteins (alpha and beta)    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    Simian 11 rotavirus GO:  RNA binding    CHAIN: M SWISS-PROT/TREMBL: P03536    KEYWORD: 3D-structure    Nonstructural protein    RNA-binding    SCOP: e.34.1.1 Multi-domain proteins (alpha and beta)    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    Simian 11 rotavirus GO:  RNA binding    CHAIN: N SWISS-PROT/TREMBL: P03536    KEYWORD: 3D-structure    Nonstructural protein    RNA-binding    SCOP: e.34.1.1 Multi-domain proteins (alpha and beta)    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    NSP3 homodimer    Simian 11 rotavirus GO:  RNA binding

Image Source: PDB

Loops in ArchDB40 clusters

1knz_A_125 - HA => SUBCLASS : 6.4.1
1knz_A_125 - HA => SUBCLASS : 7.1.1
1knz_A_136 - EH => SUBCLASS : 1.1.5
1knz_A_79 - HH => SUBCLASS : 1.1.53
1knz_A_39 - HH => SUBCLASS : 1.3.18
1knz_A_39 - HH => SUBCLASS : 1.3.19
1knz_A_61 - HH => SUBCLASS : 2.2.10
1knz_A_8 - HH => SUBCLASS : 5.1.1

Loops in ArchDB95 clusters

1knz_A_136 - EH => SUBCLASS : 1.1.3
1knz_A_79 - HH => SUBCLASS : 1.1.19
1knz_A_79 - HH => SUBCLASS : 1.1.32
1knz_A_39 - HH => SUBCLASS : 1.3.4
1knz_A_61 - HH => SUBCLASS : 2.2.9
1knz_A_8 - HH => SUBCLASS : 5.1.1
1knz_A_125 - HA => SUBCLASS : 6.5.1

Loops not clustered in ArchDB

1knz_A_114 - HE
1knz_A_93 - HH
1knz_A_141 - HH

1knz A - percentage of sequence identity: 100
1knz B - percentage of sequence identity: 100
1knz C - percentage of sequence identity: 100
1knz D - percentage of sequence identity: 100
1knz I - percentage of sequence identity: 100
1knz J - percentage of sequence identity: 100
1knz M - percentage of sequence identity: 100
1knz N - percentage of sequence identity: 100