PDB: 1lm8 Compound: elongin b Classification: TRANSCRIPTION Entry date in PDB: 2002-06-12 Resolution [Å]: 1.85 R-Factor: 0.196

CHAIN: B SWISS-PROT/TREMBL: Q15370    KEYWORD: 3D-structure    Nuclear protein    Transcription regulation    Ubl conjugation pathway    SCOP: d.15.1.1 Alpha and beta proteins (a+b)    beta-Grasp (ubiquitin-like)    Ubiquitin-like    Ubiquitin-related    Elongin B    Human (Homo sapiens) GO:  protein modification    CHAIN: C SWISS-PROT/TREMBL: Q15369    KEYWORD: 3D-structure    Nuclear protein    Transcription regulation    Ubl conjugation pathway    SCOP: d.42.1.1 Alpha and beta proteins (a+b)    POZ domain    POZ domain    BTB/POZ domain    Elongin C    Human (Homo sapiens) GO:   CHAIN: H SWISS-PROT/TREMBL: Q16665    KEYWORD: 3D-structure    Acetylation    Activator    Alternative splicing    DNA-binding    Hydroxylation    Nuclear protein    Phosphorylation    Polymorphism    Repeat    S-nitrosylation    Transcription regulation    GO:   CHAIN: V SWISS-PROT/TREMBL: P40337    KEYWORD: 3D-structure    Alternative splicing    Anti-oncogene    Disease mutation    Nuclear protein    Polymorphism    Repeat    Ubl conjugation    SCOP: b.3.3.1 All beta proteins    Prealbumin-like    VHL    VHL    VHL    Human (Homo sapiens) GO:  nucleus    protein ubiquitination

Image Source: PDB

Loops in ArchDB40 clusters

1lm8_B_24 - HE => SUBCLASS : 6.1.1
1lm8_B_2 - HA => SUBCLASS : 2.3.1
1lm8_B_42 - HA => SUBCLASS : 2.3.1
1lm8_C_18 - HA => SUBCLASS : 3.1.1
1lm8_V_84 - HA => SUBCLASS : 3.1.1
1lm8_C_28 - EH => SUBCLASS : 0.1.25
1lm8_V_106 - AR => SUBCLASS : 3.3.1
1lm8_C_33 - HH => SUBCLASS : 1.1.10
1lm8_V_182 - HH => SUBCLASS : 4.8.2

Loops in ArchDB95 clusters

1lm8_C_28 - EH => SUBCLASS : 0.1.43
1lm8_C_59 - EH => SUBCLASS : 6.15.2
1lm8_V_106 - AR => SUBCLASS : 1.1.4
1lm8_V_106 - AR => SUBCLASS : 3.3.1
1lm8_V_106 - AR => SUBCLASS : 3.5.3
1lm8_C_33 - HH => SUBCLASS : 1.1.12
1lm8_C_33 - HH => SUBCLASS : 1.2.14
1lm8_C_33 - HH => SUBCLASS : 1.2.20
1lm8_B_24 - HE => SUBCLASS : 6.1.1
1lm8_B_24 - HE => SUBCLASS : 6.1.2
1lm8_B_2 - HA => SUBCLASS : 2.3.1
1lm8_B_42 - HA => SUBCLASS : 2.3.2
1lm8_V_84 - HA => SUBCLASS : 3.1.1
1lm8_C_18 - HA => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1lm8_V_71 - AR
1lm8_V_95 - AR
1lm8_V_116 - AR
1lm8_B_49 - AR
1lm8_B_12 - EH
1lm8_V_147 - EH
1lm8_V_129 - HA
1lm8_C_40 - HE
1lm8_V_158 - HH
1lm8_C_67 - HH

1lqb A - percentage of sequence identity: 100
1vcb A - percentage of sequence identity: 100
1vcb D - percentage of sequence identity: 100
1vcb G - percentage of sequence identity: 100
1vcb J - percentage of sequence identity: 100
null nu - percentage of sequence identity: 0