PDB: 1m2o Compound: protein transport protein sec23 Classification: PROTEIN TRANSPORT/SIGNALING PROTEIN Entry date in PDB: 2002-09-20 Resolution [Å]: 2.50 R-Factor: 0.238

CHAIN: A SWISS-PROT/TREMBL: P15303    KEYWORD: 3D-structure    Endoplasmic reticulum    Golgi stack    Protein transport    Transport    SCOP: a.71.2.1 All alpha proteins    ERP29 C domain-like    Helical domain of Sec23/24    Helical domain of Sec23/24    Sec23    Baker's yeast (Saccharomyces cerevisiae) SCOP: b.2.8.1 All beta proteins    Common fold of diphtheria toxin/transcription factors/cytochrome f    beta-sandwich domain of Sec23/24    beta-sandwich domain of Sec23/24    Sec23    Baker's yeast (Saccharomyces cerevisiae) SCOP: b.2.8.1 All beta proteins    Common fold of diphtheria toxin/transcription factors/cytochrome f    beta-sandwich domain of Sec23/24    beta-sandwich domain of Sec23/24    Sec23    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.62.1.2 Alpha and beta proteins (a/b)    vWA-like    vWA-like    Trunk domain of Sec23/24    Sec23    Baker's yeast (Saccharomyces cerevisiae) SCOP: d.109.2.1 Alpha and beta proteins (a+b)    Gelsolin-like    C-terminal, gelsolin-like domain of Sec23/24    C-terminal, gelsolin-like domain of Sec23/24    Sec23    Baker's yeast (Saccharomyces cerevisiae) SCOP: g.41.10.1 Small proteins    Rubredoxin-like    Zn-finger domain of Sec23/24    Zn-finger domain of Sec23/24    Sec23    Baker's yeast (Saccharomyces cerevisiae) GO:  COPII vesicle coat    protein binding    ER to Golgi transport    intracellular protein transport    CHAIN: B SWISS-PROT/TREMBL: P20606    KEYWORD: 3D-structure    Endoplasmic reticulum    Golgi stack    GTP-binding    Protein transport    SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    SAR1    Baker's yeast (Saccharomyces cerevisiae) GO:  GTP binding    intracellular protein transport    small GTPase mediated signal transduction    CHAIN: C SWISS-PROT/TREMBL: P15303    KEYWORD: 3D-structure    Endoplasmic reticulum    Golgi stack    Protein transport    Transport    SCOP: a.71.2.1 All alpha proteins    ERP29 C domain-like    Helical domain of Sec23/24    Helical domain of Sec23/24    Sec23    Baker's yeast (Saccharomyces cerevisiae) SCOP: b.2.8.1 All beta proteins    Common fold of diphtheria toxin/transcription factors/cytochrome f    beta-sandwich domain of Sec23/24    beta-sandwich domain of Sec23/24    Sec23    Baker's yeast (Saccharomyces cerevisiae) SCOP: b.2.8.1 All beta proteins    Common fold of diphtheria toxin/transcription factors/cytochrome f    beta-sandwich domain of Sec23/24    beta-sandwich domain of Sec23/24    Sec23    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.62.1.2 Alpha and beta proteins (a/b)    vWA-like    vWA-like    Trunk domain of Sec23/24    Sec23    Baker's yeast (Saccharomyces cerevisiae) SCOP: d.109.2.1 Alpha and beta proteins (a+b)    Gelsolin-like    C-terminal, gelsolin-like domain of Sec23/24    C-terminal, gelsolin-like domain of Sec23/24    Sec23    Baker's yeast (Saccharomyces cerevisiae) SCOP: g.41.10.1 Small proteins    Rubredoxin-like    Zn-finger domain of Sec23/24    Zn-finger domain of Sec23/24    Sec23    Baker's yeast (Saccharomyces cerevisiae) GO:  COPII vesicle coat    protein binding    ER to Golgi transport    intracellular protein transport    CHAIN: D SWISS-PROT/TREMBL: P20606    KEYWORD: 3D-structure    Endoplasmic reticulum    Golgi stack    GTP-binding    Protein transport    SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    SAR1    Baker's yeast (Saccharomyces cerevisiae) GO:  GTP binding    intracellular protein transport    small GTPase mediated signal transduction

Image Source: PDB

Loops in ArchDB40 clusters

1m2o_A_322 - HE => SUBCLASS : 1.1.1
1m2o_A_355 - HE => SUBCLASS : 1.1.2
1m2o_A_3 - HE => SUBCLASS : 1.1.9
1m2o_A_355 - HE => SUBCLASS : 2.1.1
1m2o_A_618 - HE => SUBCLASS : 2.6.1
1m2o_A_134 - HE => SUBCLASS : 5.1.1
1m2o_A_653 - HA => SUBCLASS : 3.3.2
1m2o_A_71 - HA => SUBCLASS : 4.1.1
1m2o_A_484 - HA => SUBCLASS : 5.29.1
1m2o_A_18 - EH => SUBCLASS : 0.1.1
1m2o_A_661 - EH => SUBCLASS : 1.1.3
1m2o_A_661 - EH => SUBCLASS : 1.1.14
1m2o_A_123 - EH => SUBCLASS : 5.1.2
1m2o_A_180 - EH => SUBCLASS : 7.6.1
1m2o_A_369 - EH => SUBCLASS : 7.11.1
1m2o_A_444 - AR => SUBCLASS : 3.7.1
1m2o_A_399 - AR => SUBCLASS : 4.3.5
1m2o_A_639 - AR => SUBCLASS : 10.1.1
1m2o_A_603 - HH => SUBCLASS : 2.1.1
1m2o_A_603 - HH => SUBCLASS : 2.1.35
1m2o_A_517 - HH => SUBCLASS : 2.1.46

Loops in ArchDB95 clusters

1m2o_A_661 - EH => SUBCLASS : 1.1.4
1m2o_A_18 - EH => SUBCLASS : 2.1.4
1m2o_B_93 - EH => SUBCLASS : 3.9.2
1m2o_A_123 - EH => SUBCLASS : 5.1.3
1m2o_B_166 - EH => SUBCLASS : 6.5.1
1m2o_A_369 - EH => SUBCLASS : 7.11.1
1m2o_A_180 - EH => SUBCLASS : 7.14.1
1m2o_A_444 - AR => SUBCLASS : 2.2.1
1m2o_A_12 - AR => SUBCLASS : 3.4.2
1m2o_A_399 - AR => SUBCLASS : 3.10.2
1m2o_A_639 - AR => SUBCLASS : 10.3.1
1m2o_B_67 - AR => SUBCLASS : 18.1.1
1m2o_A_603 - HH => SUBCLASS : 2.1.6
1m2o_A_603 - HH => SUBCLASS : 2.1.22
1m2o_A_517 - HH => SUBCLASS : 2.1.61
1m2o_A_525 - HH => SUBCLASS : 2.3.1
1m2o_A_618 - HE => SUBCLASS : 0.1.5
1m2o_A_322 - HE => SUBCLASS : 1.1.1
1m2o_A_3 - HE => SUBCLASS : 1.2.6
1m2o_A_355 - HE => SUBCLASS : 2.1.1
1m2o_A_355 - HE => SUBCLASS : 2.1.2
1m2o_A_355 - HE => SUBCLASS : 3.2.1
1m2o_A_23 - HE => SUBCLASS : 4.76.1
1m2o_A_134 - HE => SUBCLASS : 5.1.2
1m2o_A_134 - HE => SUBCLASS : 6.15.1
1m2o_B_106 - HE => SUBCLASS : 8.8.1
1m2o_A_653 - HA => SUBCLASS : 3.6.2
1m2o_A_71 - HA => SUBCLASS : 4.1.1
1m2o_A_628 - HA => SUBCLASS : 4.4.1
1m2o_A_628 - HA => SUBCLASS : 5.10.1

Loops not clustered in ArchDB

1m2o_A_34 - AR
1m2o_A_48 - AR
1m2o_A_77 - AR
1m2o_A_109 - AR
1m2o_A_456 - AR
1m2o_A_412 - AR
1m2o_A_499 - EH
1m2o_A_710 - EH
1m2o_B_127 - EH
1m2o_B_25 - EH
1m2o_A_342 - EH
1m2o_A_283 - EH
1m2o_A_229 - EH
1m2o_A_422 - HA
1m2o_A_165 - HA
1m2o_A_156 - HA
1m2o_B_58 - HA
1m2o_B_36 - HE
1m2o_B_142 - HE
1m2o_A_190 - HE
1m2o_A_262 - HE
1m2o_A_378 - HE
1m2o_A_685 - HE
1m2o_A_722 - HH
1m2o_A_668 - HH
1m2o_A_582 - HH
1m2o_A_545 - HH
1m2o_A_311 - HH
1m2o_A_231 - HH

1m2o A - percentage of sequence identity: 100
1m2o C - percentage of sequence identity: 100
1m2v A - percentage of sequence identity: 100