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Information on 1mdb
PDB: 1mdb
Compound: 2,3-dihydroxybenzoate-amp ligase
Classification: LIGASE
Entry date in PDB: 2002-09-11
Resolution [Å]: 2.15
R-Factor: 0.217


CHAIN: A
SWISS-PROT/TREMBL: P40871
   KEYWORD: 3D-structure    Complete proteome    Ligase    Transmembrane   
EC: 6.3.2.-
SCOP: e.23.1.1 Multi-domain proteins (alpha and beta)    Acetyl-CoA synthetase-like    Acetyl-CoA synthetase-like    Acetyl-CoA synthetase-like    Dihydroxybenzoate-AMP ligase DhbE    Bacillus subtilis
GO:  catalytic activity    metabolism   
1mdb Image
Image Source: PDB

Stored Loops of 1mdb

Loops in ArchDB40 clusters

1mdb_A_433 - HA => SUBCLASS : 2.1.1
1mdb_A_131 - HA => SUBCLASS : 2.1.1
1mdb_A_42 - HA => SUBCLASS : 2.3.1
1mdb_A_409 - HA => SUBCLASS : 4.2.1
1mdb_A_325 - HA => SUBCLASS : 4.2.8
1mdb_A_409 - HA => SUBCLASS : 5.1.4
1mdb_A_439 - EH => SUBCLASS : 1.1.1
1mdb_A_252 - EH => SUBCLASS : 4.16.2
1mdb_A_77 - EH => SUBCLASS : 4.17.1
1mdb_A_337 - EH => SUBCLASS : 5.1.7
1mdb_A_101 - EH => SUBCLASS : 6.2.1
1mdb_A_225 - EH => SUBCLASS : 6.36.1
1mdb_A_101 - EH => SUBCLASS : 6.38.1
1mdb_A_125 - AR => SUBCLASS : 1.1.7
1mdb_A_423 - AR => SUBCLASS : 3.4.2
1mdb_A_355 - AR => SUBCLASS : 3.7.1
1mdb_A_355 - AR => SUBCLASS : 5.18.1

Loops in ArchDB95 clusters

1mdb_A_439 - EH => SUBCLASS : 1.1.25
1mdb_A_77 - EH => SUBCLASS : 3.8.8
1mdb_A_101 - EH => SUBCLASS : 4.2.4
1mdb_A_252 - EH => SUBCLASS : 4.6.2
1mdb_A_337 - EH => SUBCLASS : 5.1.6
1mdb_A_101 - EH => SUBCLASS : 5.3.1
1mdb_A_252 - EH => SUBCLASS : 5.41.1
1mdb_A_302 - EH => SUBCLASS : 5.50.1
1mdb_A_225 - EH => SUBCLASS : 6.61.1
1mdb_A_125 - AR => SUBCLASS : 1.2.5
1mdb_A_355 - AR => SUBCLASS : 2.2.1
1mdb_A_355 - AR => SUBCLASS : 5.16.2
1mdb_A_423 - AR => SUBCLASS : 5.27.1
1mdb_A_355 - AR => SUBCLASS : 6.1.1
1mdb_A_131 - HA => SUBCLASS : 2.1.1
1mdb_A_433 - HA => SUBCLASS : 2.1.1
1mdb_A_42 - HA => SUBCLASS : 2.3.1
1mdb_A_433 - HA => SUBCLASS : 3.2.1
1mdb_A_325 - HA => SUBCLASS : 4.13.1
1mdb_A_409 - HA => SUBCLASS : 5.1.3
1mdb_A_409 - HA => SUBCLASS : 5.4.2
1mdb_A_409 - HA => SUBCLASS : 5.4.3

Loops in ArchDB-EC clusters

1mdb_A_204 - HE => SUBCLASS : 6.26.1

Loops not clustered in ArchDB

1mdb_A_164 - AR
1mdb_A_355 - AR
1mdb_A_125 - AR
1mdb_A_423 - AR
1mdb_A_164 - AR
1mdb_A_469 - EH
1mdb_A_135 - EH
1mdb_A_199 - EH
1mdb_A_49 - EH
1mdb_A_275 - EH
1mdb_A_379 - EH
1mdb_A_505 - EH
1mdb_A_362 - HA
1mdb_A_42 - HA
1mdb_A_455 - HA
1mdb_A_154 - HA
1mdb_A_184 - HA
1mdb_A_325 - HA
1mdb_A_362 - HA
1mdb_A_409 - HA
1mdb_A_433 - HA
1mdb_A_455 - HA
1mdb_A_154 - HA
1mdb_A_184 - HA
1mdb_A_131 - HA
1mdb_A_27 - HE
1mdb_A_242 - HE
1mdb_A_318 - HE
1mdb_A_137 - HE
1mdb_A_111 - HE
1mdb_A_86 - HE
1mdb_A_53 - HE
1mdb_A_261 - HE
1mdb_A_280 - HE
1mdb_A_346 - HE
1mdb_A_396 - HE
1mdb_A_442 - HE
1mdb_A_485 - HE
1mdb_A_10 - HH
1mdb_A_235 - HH
1mdb_A_312 - HH

Homologous structures to 1mdb classified in ArchDB

1md9 A - percentage of sequence identity: 100
1mdf A - percentage of sequence identity: 100