PDB: 1mpg Compound: 3-methyladenine DNA glycosylase ii Classification: HYDROLASE Entry date in PDB: 1998-01-28 Resolution [Å]: 1.80 R-Factor: 0.194

CHAIN: A SWISS-PROT/TREMBL: P04395    KEYWORD: 3D-structure    Complete proteome    DNA repair    Hydrolase    EC: 3.2.2.21 SCOP: a.96.1.3 All alpha proteins    DNA-glycosylase    DNA-glycosylase    DNA repair glycosylase, 2 C-terminal domains    3-Methyladenine DNA glycosylase II (gene alkA or aidA)    Escherichia coli SCOP: d.129.1.2 Alpha and beta proteins (a+b)    TBP-like    TATA-box binding protein-like    DNA repair glycosylase, N-terminal domain    3-Methyladenine DNA glycosylase II (gene alkA or aidA)    Escherichia coli GO:  alkylbase DNA N-glycosylase activity    DNA binding    base-excision repair    DNA repair    CHAIN: B SWISS-PROT/TREMBL: P04395    KEYWORD: 3D-structure    Complete proteome    DNA repair    Hydrolase    EC: 3.2.2.21 SCOP: a.96.1.3 All alpha proteins    DNA-glycosylase    DNA-glycosylase    DNA repair glycosylase, 2 C-terminal domains    3-Methyladenine DNA glycosylase II (gene alkA or aidA)    Escherichia coli SCOP: d.129.1.2 Alpha and beta proteins (a+b)    TBP-like    TATA-box binding protein-like    DNA repair glycosylase, N-terminal domain    3-Methyladenine DNA glycosylase II (gene alkA or aidA)    Escherichia coli GO:  alkylbase DNA N-glycosylase activity    DNA binding    base-excision repair    DNA repair

Image Source: PDB

Loops in ArchDB40 clusters

1mpg_A_28 - HA => SUBCLASS : 2.2.1
1mpg_A_28 - HA => SUBCLASS : 2.2.21
1mpg_A_35 - HA => SUBCLASS : 2.3.11
1mpg_A_44 - HA => SUBCLASS : 4.1.1
1mpg_A_44 - HA => SUBCLASS : 4.1.6
1mpg_A_158 - HH => SUBCLASS : 2.1.5
1mpg_A_166 - HH => SUBCLASS : 3.9.1
1mpg_A_113 - HH => SUBCLASS : 4.11.1
1mpg_A_202 - HH => SUBCLASS : 5.16.1

Loops in ArchDB95 clusters

1mpg_A_58 - EH => SUBCLASS : 1.1.47
1mpg_A_158 - HH => SUBCLASS : 2.1.1
1mpg_A_166 - HH => SUBCLASS : 3.2.1
1mpg_A_166 - HH => SUBCLASS : 3.4.3
1mpg_A_113 - HH => SUBCLASS : 4.15.1
1mpg_A_202 - HH => SUBCLASS : 5.23.1
1mpg_A_28 - HA => SUBCLASS : 2.2.25
1mpg_A_28 - HA => SUBCLASS : 2.2.34
1mpg_A_35 - HA => SUBCLASS : 2.3.3
1mpg_A_35 - HA => SUBCLASS : 2.3.4
1mpg_A_44 - HA => SUBCLASS : 4.1.1
1mpg_A_44 - HA => SUBCLASS : 4.1.11

Loops in ArchDB-EC clusters

1mpg_A_202 - HH => SUBCLASS : 5.9.1

Loops not clustered in ArchDB

1mpg_A_2 - EH
1mpg_A_35 - HA
1mpg_A_28 - HA
1mpg_A_44 - HA
1mpg_A_12 - HE
1mpg_A_128 - HH
1mpg_A_176 - HH
1mpg_A_88 - HH
1mpg_A_239 - HH
1mpg_A_250 - HH
1mpg_A_71 - HH
1mpg_A_217 - HH

1diz A - percentage of sequence identity: 100
1diz B - percentage of sequence identity: 100
1mpg A - percentage of sequence identity: 100
1mpg B - percentage of sequence identity: 100
1pvs A - percentage of sequence identity: 100
1pvs B - percentage of sequence identity: 100