PDB: 1n13 Compound: pyruvoyl-dependent arginine decarboxylase beta cha Classification: LYASE Entry date in PDB: 2003-03-25 Resolution [Å]: 1.40 R-Factor: 0.191

CHAIN: A SWISS-PROT/TREMBL: Q57764    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyruvate    EC: 4.1.1.19 SCOP: d.155.1.2 Alpha and beta proteins (a+b)    Pyruvoyl-dependent histidine and arginine decarboxylases    Pyruvoyl-dependent histidine and arginine decarboxylases    Arginine decarboxylase    Arginine decarboxylase    Archaeon Methanococcus jannaschii GO:  arginine decarboxylase activity    arginine catabolism    CHAIN: B SWISS-PROT/TREMBL: Q57764    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyruvate    EC: 4.1.1.19 SCOP: d.155.1.2 Alpha and beta proteins (a+b)    Pyruvoyl-dependent histidine and arginine decarboxylases    Pyruvoyl-dependent histidine and arginine decarboxylases    Arginine decarboxylase    Arginine decarboxylase    Archaeon Methanococcus jannaschii GO:  arginine decarboxylase activity    arginine catabolism    CHAIN: C SWISS-PROT/TREMBL: Q57764    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyruvate    EC: 4.1.1.19 SCOP: d.155.1.2 Alpha and beta proteins (a+b)    Pyruvoyl-dependent histidine and arginine decarboxylases    Pyruvoyl-dependent histidine and arginine decarboxylases    Arginine decarboxylase    Arginine decarboxylase    Archaeon Methanococcus jannaschii GO:  arginine decarboxylase activity    arginine catabolism    CHAIN: D SWISS-PROT/TREMBL: Q57764    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyruvate    EC: 4.1.1.19 SCOP: d.155.1.2 Alpha and beta proteins (a+b)    Pyruvoyl-dependent histidine and arginine decarboxylases    Pyruvoyl-dependent histidine and arginine decarboxylases    Arginine decarboxylase    Arginine decarboxylase    Archaeon Methanococcus jannaschii GO:  arginine decarboxylase activity    arginine catabolism    CHAIN: E SWISS-PROT/TREMBL: Q57764    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyruvate    EC: 4.1.1.19 SCOP: d.155.1.2 Alpha and beta proteins (a+b)    Pyruvoyl-dependent histidine and arginine decarboxylases    Pyruvoyl-dependent histidine and arginine decarboxylases    Arginine decarboxylase    Arginine decarboxylase    Archaeon Methanococcus jannaschii GO:  arginine decarboxylase activity    arginine catabolism    CHAIN: F SWISS-PROT/TREMBL: Q57764    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyruvate    EC: 4.1.1.19 SCOP: d.155.1.2 Alpha and beta proteins (a+b)    Pyruvoyl-dependent histidine and arginine decarboxylases    Pyruvoyl-dependent histidine and arginine decarboxylases    Arginine decarboxylase    Arginine decarboxylase    Archaeon Methanococcus jannaschii GO:  arginine decarboxylase activity    arginine catabolism    CHAIN: G SWISS-PROT/TREMBL: Q57764    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyruvate    EC: 4.1.1.19 SCOP: d.155.1.2 Alpha and beta proteins (a+b)    Pyruvoyl-dependent histidine and arginine decarboxylases    Pyruvoyl-dependent histidine and arginine decarboxylases    Arginine decarboxylase    Arginine decarboxylase    Archaeon Methanococcus jannaschii GO:  arginine decarboxylase activity    arginine catabolism    CHAIN: H SWISS-PROT/TREMBL: Q57764    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyruvate    EC: 4.1.1.19 SCOP: d.155.1.2 Alpha and beta proteins (a+b)    Pyruvoyl-dependent histidine and arginine decarboxylases    Pyruvoyl-dependent histidine and arginine decarboxylases    Arginine decarboxylase    Arginine decarboxylase    Archaeon Methanococcus jannaschii GO:  arginine decarboxylase activity    arginine catabolism    CHAIN: I SWISS-PROT/TREMBL: Q57764    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyruvate    EC: 4.1.1.19 SCOP: d.155.1.2 Alpha and beta proteins (a+b)    Pyruvoyl-dependent histidine and arginine decarboxylases    Pyruvoyl-dependent histidine and arginine decarboxylases    Arginine decarboxylase    Arginine decarboxylase    Archaeon Methanococcus jannaschii GO:  arginine decarboxylase activity    arginine catabolism    CHAIN: J SWISS-PROT/TREMBL: Q57764    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyruvate    EC: 4.1.1.19 SCOP: d.155.1.2 Alpha and beta proteins (a+b)    Pyruvoyl-dependent histidine and arginine decarboxylases    Pyruvoyl-dependent histidine and arginine decarboxylases    Arginine decarboxylase    Arginine decarboxylase    Archaeon Methanococcus jannaschii GO:  arginine decarboxylase activity    arginine catabolism    CHAIN: K SWISS-PROT/TREMBL: Q57764    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyruvate    EC: 4.1.1.19 SCOP: d.155.1.2 Alpha and beta proteins (a+b)    Pyruvoyl-dependent histidine and arginine decarboxylases    Pyruvoyl-dependent histidine and arginine decarboxylases    Arginine decarboxylase    Arginine decarboxylase    Archaeon Methanococcus jannaschii GO:  arginine decarboxylase activity    arginine catabolism    CHAIN: L SWISS-PROT/TREMBL: Q57764    KEYWORD: 3D-structure    Complete proteome    Decarboxylase    Lyase    Pyruvate    EC: 4.1.1.19 SCOP: d.155.1.2 Alpha and beta proteins (a+b)    Pyruvoyl-dependent histidine and arginine decarboxylases    Pyruvoyl-dependent histidine and arginine decarboxylases    Arginine decarboxylase    Arginine decarboxylase    Archaeon Methanococcus jannaschii GO:  arginine decarboxylase activity    arginine catabolism

Image Source: PDB

Loops in ArchDB40 clusters

1n13_B_88 - HA => SUBCLASS : 7.4.1

Loops in ArchDB95 clusters

1n13_B_116 - HE => SUBCLASS : 1.2.11
1n13_B_88 - HA => SUBCLASS : 7.3.1

Loops not clustered in ArchDB

1n13_B_75 - AR
1n13_B_138 - AR
1n13_B_106 - EH

1mt1 B - percentage of sequence identity: 100
1mt1 D - percentage of sequence identity: 100
1mt1 F - percentage of sequence identity: 100
1mt1 H - percentage of sequence identity: 100
1mt1 J - percentage of sequence identity: 100
1mt1 L - percentage of sequence identity: 100
1n13 B - percentage of sequence identity: 100
1n13 D - percentage of sequence identity: 100
1n13 F - percentage of sequence identity: 100
1n13 H - percentage of sequence identity: 100
1n13 J - percentage of sequence identity: 100
1n13 L - percentage of sequence identity: 100
1n2m A - percentage of sequence identity: 100
1n2m B - percentage of sequence identity: 100
1n2m C - percentage of sequence identity: 100
1n2m D - percentage of sequence identity: 100
1n2m E - percentage of sequence identity: 100
1n2m F - percentage of sequence identity: 100
null nu - percentage of sequence identity: 0